Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc438g00001 ATGGAGTTTGTGGCAGAAAATCATCAAAGTCCTTCTTTGTTGGGTTCTTCTTCTTCCTTTGTTGAGAGGGTGAACATGGTTGGTAGCCGTGCCCTCTCTGCCATTCTTAGAAACATCTTCTCTGCCATCTTCACCTTCTGCTTTGCATTAGTGGGGACATTGTTGGGGGCTATGACTGGAGCTTTGATAGGACAAGAAACAGAGAGTGGATTCATGAGAGGTGCTGCCATTGGAGCCATTTCAGGAGCTGTTTTTTCCATTGAAGTGTTTGAATCTTCTCTTGTTCTTTGGGAATCTGAAGAATCTGGAATTGGCTGCCTCTTACATTACTTGCTTGATGTAATTGCAAGCCTATTGAGTGGGAGACTCGTGAGAGAAAGGATTGGTCCAGCCATGTTAAGTGCTGTCCAAAGTCAGATGGGTGCTGTAGAGATTGACTTTGATGATGTTCAAAACATCTTTGACATTGGTGGTGCAAAAGGCTTATCAAGAGATTCAGTTGAAAAGATCTCAAAGATCTTAATTACAAGTGACAACAATGTTGATGCTTCCGGTGAAAAGGTTTCTTGCTCAGTTTGCCTTCAGGACTTTCAAATTGGAGAAACAGTTAGAAGTTTGCCTCATTGCCATCACATGTTTCACCTACCTTGCATTGACAAGTGGCTCATAAGGCATGGATCTTGTCCCCTATGTAGAAGGGATCTGTAA 708 0.4266 MEFVAENHQSPSLLGSSSSFVERVNMVGSRALSAILRNIFSAIFTFCFALVGTLLGAMTGALIGQETESGFMRGAAIGAISGAVFSIEVFESSLVLWESEESGIGCLLHYLLDVIASLLSGRLVRERIGPAMLSAVQSQMGAVEIDFDDVQNIFDIGGAKGLSRDSVEKISKILITSDNNVDASGEKVSCSVCLQDFQIGETVRSLPHCHHMFHLPCIDKWLIRHGSCPLCRRDL 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc438g00001 235 PANTHER NEP1-INTERACTING PROTEIN-LIKE 2 21 234 IPR044523 -
Stsc438g00001 235 FunFam NEP1-interacting protein-like 1 150 235 - -
Stsc438g00001 235 Pfam Ring finger domain 189 232 IPR001841 -
Stsc438g00001 235 ProSiteProfiles Zinc finger RING-type profile. 190 232 IPR001841 -
Stsc438g00001 235 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 154 235 IPR013083 -
Stsc438g00001 235 SMART ring_2 190 231 IPR001841 -
Stsc438g00001 235 Pfam YMGG-like Gly-zipper 48 84 IPR027367 -
Stsc438g00001 235 SUPERFAMILY RING/U-box 189 235 - -
Stsc438g00001 235 CDD RING-H2_NIPL1-like 189 232 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc438g00001 Stsc-Chr438 1777 5158 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc438g00001 16 235 C3H Transcription Factor Family AT5G66070 74.545 6.37e-113 321
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc438g00001 - - qsa:O6P43_024909 370.163