Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc437g00004 ATGTCTTCCCCAACACATACACCAACGCCAACCATGGATCCCTCTTCACGCCACCACTCCTACAATCGTAAGCAGAAATCCCTCGGCCTCTTGTGCACCAATTTCTTGAAATTGTATAATAAGGACACCGTCCACTCGATCGGCCTCGACGATGCAGCAGCTCGATTAGGTGTTGAGAGGCGGCGGATCTATGATATAGTGAACGTCTTGGAGAGTGTCGGGGTGCTTTCTAGAAAAGCCAAGAATCAGTATACTTGGAAAGGCTTTGCTGCTATTCCTGGGGCTTTAGAAGACCTCAAGGACGAGGGTTTGAGAGAGAATCCCTATGGTTTTGATGGTGATAATGAAATTGCAAAATTGTCAGATGATGAGGACGATGAAGAAATAATGTCAAATCCCAGTACTGGAAGTCAGAATGACAAATCAAATCCCAATTCCTCACTTATCAAATCTTTGAAGCCTGAAAACAGAAGGGAAAAATCTCTGGCGCTTCTTACTCAAAATTTTGTCAAGCTCTTTGTCTGCTCTAATATTGAAATGATTTCCCTCGACGAAGCTGCAAAACTGTTGCTTGGAAATGCTCATAATACATCAATAATGAGAACAAAAGTCAGGCGATTATATGATATTGCAAACGTGTTGTCCTCCATGAACCTTATTGAGAAGACTCATACAACAGACACAAGAAAACCAGCATTCAGGTGGCTTGGTTTAAGAGGGAAGCCATGGAGCGAGTCAGGTGACTCTGTTCTGAATTCAAATCACGGCAGTGAGTCAAGGAAAAGGAGGTTTGGTAATGACATCAGCAACATTAGCTTCAAGAGGAACAAAGTGGATCTGTTCATGAATGCTGAGAGTAGCTGCAAGATGCAAGAACAACTCGAAAACGATGATGATAATTGTTGGCGAGCACACTCGGATAGAGGCACTGTGAAACAAGAAGGACAACAGAATTCAAAGAGCTACCAGTTTGGTCCTTTTGCTCCAGAGTTTGTGTCCAAAAATGGTGGAGCGTCTGAGAATAGTGGTGTGAAGCAGGTTCATGATTGGGAGAGTCTCTCAAATGTGTATCGTCCTCGGTATCAAAACCAAGCTTTGAAAGACCTCTTCTCCCACTACATGGAAGCATGGAAATCTTGGTACTCCGAAGTTGCAGGGAAAAGGCCAATAAAAATTTTATAG 1182 0.4315 MSSPTHTPTPTMDPSSRHHSYNRKQKSLGLLCTNFLKLYNKDTVHSIGLDDAAARLGVERRRIYDIVNVLESVGVLSRKAKNQYTWKGFAAIPGALEDLKDEGLRENPYGFDGDNEIAKLSDDEDDEEIMSNPSTGSQNDKSNPNSSLIKSLKPENRREKSLALLTQNFVKLFVCSNIEMISLDEAAKLLLGNAHNTSIMRTKVRRLYDIANVLSSMNLIEKTHTTDTRKPAFRWLGLRGKPWSESGDSVLNSNHGSESRKRRFGNDISNISFKRNKVDLFMNAESSCKMQEQLENDDDNCWRAHSDRGTVKQEGQQNSKSYQFGPFAPEFVSKNGGASENSGVKQVHDWESLSNVYRPRYQNQALKDLFSHYMEAWKSWYSEVAGKRPIKIL 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc437g00004 393 PANTHER TRANSCRIPTION FACTOR E2F 6 361 IPR015633 GO:0000978|GO:0006357
Stsc437g00004 393 SUPERFAMILY "Winged helix" DNA-binding domain 159 238 IPR036390 -
Stsc437g00004 393 MobiDBLite consensus disorder prediction 122 153 - -
Stsc437g00004 393 MobiDBLite consensus disorder prediction 1 22 - -
Stsc437g00004 393 Pfam E2F/DP family winged-helix DNA-binding domain 159 237 IPR003316 GO:0005667|GO:0006355
Stsc437g00004 393 Pfam E2F/DP family winged-helix DNA-binding domain 24 88 IPR003316 GO:0005667|GO:0006355
Stsc437g00004 393 MobiDBLite consensus disorder prediction 1 16 - -
Stsc437g00004 393 Gene3D - 18 90 IPR036388 -
Stsc437g00004 393 Gene3D - 153 239 IPR036388 -
Stsc437g00004 393 SMART E2F_TDP_2 23 88 IPR003316 GO:0005667|GO:0006355
Stsc437g00004 393 SMART E2F_TDP_2 157 237 IPR003316 GO:0005667|GO:0006355
Stsc437g00004 393 SUPERFAMILY "Winged helix" DNA-binding domain 22 86 IPR036390 -
Stsc437g00004 393 MobiDBLite consensus disorder prediction 131 151 - -
Stsc437g00004 393 FunFam E2F transcription factor 8 18 90 - -
Stsc437g00004 393 FunFam E2F transcription factor-like E2FE 152 239 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc437g00004 Stsc-Chr437 17699 24755 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc437g00004 18 390 E2F-DP Transcription Factor Family AT3G48160 57.441 6.88e-133 385
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Stsc437g00004 E2F_TDP 1.1e-20 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc437g00004 K09391 - qsa:O6P43_030916 528.094