Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc435g00002 ATGATGGTGTGTGAGAAGGAGAGTGAGTGCATTGAGGACATGGAAGTTGAAATCCTGCCTTCAATGTGGCCTGAAGATATTGGAAGTGAAGTTGGAAAGCAATTCAATATAGAAAAGCCTGGAAGGGACCAGGATATGTTGGAGGATGTTACAATCATAGAGGAGCCAACTATAGCCGATTTCAAGCGCCTCATGGAGCTTACCAATTTCACTGAGAAAGGGTCTTCTCAGTTAGCATACCTCATGAAACACTGGGAGTACAAGCAGGCAAATGCGGTGCGCCTTCTAAGGGAGGAACTTGACAACCTTAGCAAGCAAAGGCAGGATGTTGAGCTAAGGAAAATGGAGATACTGGAGGAGCATCGGTTCGAGGAAGAAAGATATGGAGGGGACAAACGGCCGGTGTCTATATTGGAGGATGTTTATGATATATGGCAGGACGTGCCGCGAAGGAAGAACAAGGTTGTGGTTCAGAACAAGAGAATTGAAATAGATGCTGCTGAGTATGATACTGTTAAGTATTGGAAACAAAGGGCCTTGCATTCGGAGAAATTGCTTGAAGCAAGCATCCAGAGAGAGCAGATACTCCAAGAGAAGTTGCAAGAAAGGATAAATAACATTGAGAGGCAATCCTCACCTGTAGAAGAACTCTCCCAGATTCTGAAAAGAGCAGATAATTTCTTACATTTCATACTCCAGAATGCACCTGTTGTTATTGGCCATCAGGACAAGGAGTTGCGGTATCGGTTTATCTATAATCATTTTCCAAGTTTGCAAGAGGAGGACATAATAGGAAAAACAGATGTTGAAATATTCACAGGATCTGGTGTGAAAGAATCTCAAGAGTTCAAGAGGGAAGTGTTGGAAAAAGGATTACCTGCAAAAAGGGAAATCACTTTTGAGACAGAACTATTTGGGTCAAAGACATTCTTGATATATGTAGAACCTGTCTTTAGCAAGGCAGGGGAGACAATTGGAATAAACTATATGGGAATGGATGTAACAGATCAGGTGAGGAAAAGAGAAAGGATGGCCAAGATCCGCGAAGAGATTGCGGTTCAGAAAGCAAAGGAAACAGAACTAAACAAAACCATTCACATTACAGAGGAGACTATGAGAGCAAAACAAATGCTGGCCACAATGTCTCATGAGATTAGGTCTCCATTATCTGGGGTTGTAAGCATGGCTGAAGTTCTTTCTACCACAAGGCTTGATGGGGAGCAAAGACAGCTCTTGGATGTTATGCTATCTTCAGGAGATTTGGTTCTTCAACTTATAAATGACATACTTGATCTTTCCAAGGTTGAATCAGGAGTTATGAAGTTGGAGGCCACTAAATTCCGGCCACGAGAGGTAGTAAAGCACGTACTCCAGACGGCTGCAGCGTCGTTGCAGAAAATATTAACCTTAGAAGGACATGTGTCAGATGATGTACCAATTGAGGTCATTGGTGATGTTTTAAGGATTCGGCAAATCCTTACAAACTTGATCAGCAATGCCATTAAGTTTACACATGAAGGGAAAGTTGGTATAAACCTATATGTTGTTTCTGAGCCAAGTTTTGCAAAGCATTCAAGTGTTTCTGGAACTCAAGCAAATGAAGATAGATACCTCTCAACACCTCAAAGTAGCAGTGACCGAAATCTTCTTGATGGTCAAAGACATGATCACCCTCCAAGCCAAAACCATGCATTTCATGGTGAATGCAGATCACCAGTTAAAAGTGAATGCTCAGCAAATGGAGACACTGAGGAGCATCATCATTCCACAGAGACAACGGTGTGGATTCGCTGTGATGTATATGACACAGGCATTGGAATACCAGAAAATGCAATATCTACTTTATTTAAAAGGTACATGCAAGTTGGCGCGGATCATGCTCGAAAATATGGTGGCACAGGACTAGGACTAGCAATATGCAAGCAACTGGTTGAGTTGATGGGGGGTCATCTAACAGTGTCTAGCAAAGAACACCATGGCTCTACCTTCACATTCATACTTCCCTACAAGGTTTCAATCATTGAGGAAAATTCTGATGACACAGATGAGCTCTCTGATATGGAGAATGATGAGGGTGCTTGTGATGATACAACTGAAAGTTTCTTCCAATTCCAACCGCGAACTTTAGGCTCTCTTTTCACCTCAAATGGTTCTTGCAGGACACAGAAGCTATTAACACATAAGATTGGCTACACAAGCTCAAATACTTCAGAGTGTTCATTCTCATTCCCATCTCATGATATCATATCAAAAGGGACATGTTCTGTTCAGGATTCATCTTTAGTAGTTGATGCTCCAGAGATATCTGAATCATCAGCAAGTTCATCCGGTCAGAGCCGAGAAACAAACATCGAAAATGTAGTTAGCAGAGATAAATATTGTCAAGATAAGGGTATTGCAGATTCTTCTAGACATATGGCTGCAGCTTCAGAAATGGATATGGCAACAAAGTCAAGTGAACTTCAACAAAAATTTATGGTTCAAGGGAATGTTACTAGCATCTTTGCATCAGAATTAACCAAATCCACATCAAAGCCGAAGATCCTTCTAGTTGAAGATAGCAAGATTAATGTCATGGTGACACAATCCATGATGAAGCAGTTAGGCCATAGTATAGATGTTGTGAATAATGGAGCCGAAGCAGTTCGTGCTGTTCATAACTGCTCTTATGACCTGGTTCTGATGGATGTTTGCATGCCAATAATGAATGGTCTTCAGGCGACGAAATTGATTCGGTCTTTTGAGGAAACAAGAAACTGGGATGCTGCAAGAAAAGCTTTAATGGAGCTAAATCTACCAGAACTAGATTATGAATGTTCTGGACCATCTAAAAAGCGGATTCCAATTGTTGCGATGACAGCAAATGCTTTGTCAGAGAGTGCTGAAGAATGTTTTGCAAATGGTATGGACTCATTTGTGTCAAAACCTGTAACTTTTCAAAAACTGAAAGAGTGTCTTGAACAGTACCTAAGTTGA 2976 0.4123 MMVCEKESECIEDMEVEILPSMWPEDIGSEVGKQFNIEKPGRDQDMLEDVTIIEEPTIADFKRLMELTNFTEKGSSQLAYLMKHWEYKQANAVRLLREELDNLSKQRQDVELRKMEILEEHRFEEERYGGDKRPVSILEDVYDIWQDVPRRKNKVVVQNKRIEIDAAEYDTVKYWKQRALHSEKLLEASIQREQILQEKLQERINNIERQSSPVEELSQILKRADNFLHFILQNAPVVIGHQDKELRYRFIYNHFPSLQEEDIIGKTDVEIFTGSGVKESQEFKREVLEKGLPAKREITFETELFGSKTFLIYVEPVFSKAGETIGINYMGMDVTDQVRKRERMAKIREEIAVQKAKETELNKTIHITEETMRAKQMLATMSHEIRSPLSGVVSMAEVLSTTRLDGEQRQLLDVMLSSGDLVLQLINDILDLSKVESGVMKLEATKFRPREVVKHVLQTAAASLQKILTLEGHVSDDVPIEVIGDVLRIRQILTNLISNAIKFTHEGKVGINLYVVSEPSFAKHSSVSGTQANEDRYLSTPQSSSDRNLLDGQRHDHPPSQNHAFHGECRSPVKSECSANGDTEEHHHSTETTVWIRCDVYDTGIGIPENAISTLFKRYMQVGADHARKYGGTGLGLAICKQLVELMGGHLTVSSKEHHGSTFTFILPYKVSIIEENSDDTDELSDMENDEGACDDTTESFFQFQPRTLGSLFTSNGSCRTQKLLTHKIGYTSSNTSECSFSFPSHDIISKGTCSVQDSSLVVDAPEISESSASSSGQSRETNIENVVSRDKYCQDKGIADSSRHMAAASEMDMATKSSELQQKFMVQGNVTSIFASELTKSTSKPKILLVEDSKINVMVTQSMMKQLGHSIDVVNNGAEAVRAVHNCSYDLVLMDVCMPIMNGLQATKLIRSFEETRNWDAARKALMELNLPELDYECSGPSKKRIPIVAMTANALSESAEECFANGMDSFVSKPVTFQKLKECLEQYLS 991
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc435g00002 991 Gene3D PAS domain 206 337 - -
Stsc435g00002 991 SUPERFAMILY CheY-like 844 991 IPR011006 -
Stsc435g00002 991 Gene3D - 338 436 - -
Stsc435g00002 991 FunFam Probable histidine kinase 1 566 674 - -
Stsc435g00002 991 PANTHER TWO-COMPONENT HISTIDINE PROTEIN KINASE 53 990 - -
Stsc435g00002 991 MobiDBLite consensus disorder prediction 525 589 - -
Stsc435g00002 991 FunFam Histidine kinase 5 840 991 - -
Stsc435g00002 991 Pfam Response regulator receiver domain 848 915 IPR001789 GO:0000160
Stsc435g00002 991 CDD HisKA 375 434 IPR003661 GO:0000155|GO:0007165
Stsc435g00002 991 SMART REC_2 846 986 IPR001789 GO:0000160
Stsc435g00002 991 ProSiteProfiles Response regulatory domain profile. 847 990 IPR001789 GO:0000160
Stsc435g00002 991 CDD HATPase_EvgS-ArcB-TorS-like 489 668 - -
Stsc435g00002 991 SMART HKATPase_4 484 671 IPR003594 -
Stsc435g00002 991 Coils Coil 190 210 - -
Stsc435g00002 991 Gene3D - 437 673 IPR036890 -
Stsc435g00002 991 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 372 438 IPR036097 GO:0000155|GO:0007165
Stsc435g00002 991 CDD REC_hyHK_CKI1_RcsC-like 848 986 - -
Stsc435g00002 991 ProSiteProfiles Histidine kinase domain profile. 380 671 IPR005467 -
Stsc435g00002 991 SMART HisKA_10 373 438 IPR003661 GO:0000155|GO:0007165
Stsc435g00002 991 PRINTS Bacterial sensor protein C-terminal signature 596 610 IPR004358 GO:0016310|GO:0016772
Stsc435g00002 991 PRINTS Bacterial sensor protein C-terminal signature 631 649 IPR004358 GO:0016310|GO:0016772
Stsc435g00002 991 PRINTS Bacterial sensor protein C-terminal signature 655 668 IPR004358 GO:0016310|GO:0016772
Stsc435g00002 991 FunFam Putative histidine kinase 5 361 438 - -
Stsc435g00002 991 MobiDBLite consensus disorder prediction 525 548 - -
Stsc435g00002 991 Pfam His Kinase A (phospho-acceptor) domain 375 438 IPR003661 GO:0000155|GO:0007165
Stsc435g00002 991 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 427 669 IPR036890 -
Stsc435g00002 991 FunFam Histidine kinase 5 215 350 - -
Stsc435g00002 991 MobiDBLite consensus disorder prediction 549 563 - -
Stsc435g00002 991 Coils Coil 93 120 - -
Stsc435g00002 991 Gene3D - 839 991 - -
Stsc435g00002 991 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 484 669 IPR003594 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc435g00002 Stsc-Chr435 10792 15034 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc435g00002 2 990 Histidine Kinase Gene Family AT5G10720 57.905 0.0 1108
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Stsc435g00002 HATPase_c 1.5e-27 CL0025
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc435g00002 - - gmx:100819520 1531.92