Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc435g00001 ATGAAGAATAACGTTACAAGATTGTTGGTTGTGTTGTTGGTGGGTGTTGTGGGGGTAGCGGCACAAGCACAAGGAAATAAGAAGAATAATGGTAGAGCAAGAGAAGTGAAAGTGGGAGCGGTGCTTGATGTTGGGGTTGGAATGGTAGGGAAGATGGGTTTGAACAGCATCACAATGTGTATCAATGATTTCTATGTCTCAAATCCTCGTTACAAAACCAGGCTCCAACTTGTTCTTAGGGATTCACAAAGGAACGTTCTTACTGCTGCTGCTCAAGCTTTAGATCTCATAAAGAATGAGCAAGTGGAAGCAATCATAGGACCAGTTACACCAATGGAAGCCATGTTTGTGATGAACCTCGGTGACAAAGCTCACGTGCCTATTCTCACTTTCTCAGCAACAAGCCCTACTCTCTCATCAATCCACACACCATATTTCTTCCAAATTGCACAGCAGGACATAACTCAGGTAGAAGCCATAACCGCCATTATCCAAGCTTTTGGATGGAAAGAAGTGGTTCCAATTTATGTGGACAACACTTATGGTCAAGGACTCATTCCATCCCTTACCAATTCACTTCAGAAAGCTTACATCCGTGTTCCTTATCTCACTCCCATTGATTACTCAGCCTCAGATGATGCCATTGAAAAAGAACTCTACAAGCTTATGACAATGCAAACCAGAGTGTTTGTTGTTCACATGACACCCCCTCTTGGCACTCGTCTCTTCTCCATTGCTAAAACCATTGGCATGATGGATCAAGGTTATGTCTGGATTGTCACCGATGGAATGGCTAATTTCTTTAACTCGTTGGATTCTTCAATTATGGAATCCATGGAAGGTGTGTTGGGTGTTAAGCCTTATATTCCAAGAACTAAACAGCTTCGTGATTTTCGAGCTCGATGGAAACGACACTTCTTAAGAGACAATCCAACACTTGTTGATATCAATCTCAATGCTCTTGGAATATGGGCCTATGATGCTACCACTGCCTTGGCCATGGCCGTTGAGAAACTTGACACCACCCTTTCTGGCTTCACTCATGTCAGCAACAACTCAAGCAATGTGACTGATCTTGAAAACTTCGGTGTTTCGAGAAACGGTGAGAAGCTGAGGGAAGCTTTGTCAAATGTTAGATTCAAAGGTGTGGGTGGTGACTTCAAATTAGTTGGCAGTGGGGAGTTACAAACATCACCATTTGAGATAGTTAATGTGATTGGTAATGGAGAAAGAAACATTGGGTTTTGGATGCCCCAAAAGGGACTAATCAGAAACATGGATGACAAAAATTCAACAACAAGAACAAGCGCATATTCAACTTGTAAGAAGAATCTAGGAACAATTATATGGCCAGGGGACTCTTACTCTGTTCCAAAGGGGTGGCAGATCCCCACAAATGGTAACAGGTTAAGGATAGGGGTCCCAGTGAAAAATAGTGGCTACTCTGAATTTGTGAAAGTAATCCATGAACCTGTTACCAACTCTACAACGGTCAGGGGGTTCTGCATTGATGTCTTCAATGCTGTGGTATTAGACGCGTTGCCTTATGCTCTTCCATTTGATTTCATTCCATTTGAAAAGCCCAATGGTGAGATGGCAGGAACCTATGATGATTTGATCTCCCAAGTTTATTATGGGAAATTTGATGCTGTGGTGGGGGATACAACTATTACAGCAAACAGGTCGAATTACGTTGATTTCACATTGCCATATACAGAATCTGGTGTGACTATGGTTGTTCCAATAAGAGACAACAGAAAGAAGAATGCATGGGCCTTCTTGAAGCCATTGACATGGGACCTTTGGGTTACAACATTTTGTACATTTGTATTCATAGGATTTGTTGTTTGGGTACTTGAACACCGAATCAACAGCCATTTCAGAGGGCCTCCTTCTTATCAGATTGGCACTAGCCTGTGGTTTTCTTTCTCAACCATTGTGTTTTCTCATCGGGAGAGGGTAGCAAGCAACTGTGGAAGATTTGTGGTGATAGTGTGGGTTTTTGTGGTTCAAATTCTTGTTCAAAGCTACACTGCAAGCCTTACCTCCCTCTTAACAGTTGAACAACTACGCCCGGCTATTACCGATGTGCATCAACTCCTAAAGAATCGGCTGAATGTTGGTTATTTGGAAGGTTCTTTTGTTCATGAAATCTTGAAGGATTTGGGGTTCCAAGAATACCAGCTCAAGATTTACAAATCTGCAGAAGAATGCAATGATCTCTTTACAAAAGGAAGTGCAAATGGTGGTATCGATGCTGCATTCGATGAAGTTCCATATGTGACTCGCCTTCTTCAAATTTACTGCTCTAAGTATACCATGATTGAGCCAAAATTTAAAACTGGTGGCTTTGGATTTGTATTTCCAAAAGGGTCACCTCTTGTATCAGACATATCAAGGGCAATTTTGAATGTGACTCAAGGAGACAAAATGAAGACAATTGAGAATGCATGGTTGAATGGAAGCAGTTGTCCAGAATCTAGTGCTCAGGTTTCTTCTGCAAGTTTAGGACTTGAAAGCTTCTGGGGTCTATTTCTTGTTATAGGTGTTTCTTGTGCATTAGCACTCATAATTGGAACCTTGCTAAGTATCTTCAATGAGAAAGACATGAATTCTCACACTTTCAAGAAAAGTAAATTAAAGCAAGATGCAAGTGTAGCTAGTAGTCCTGCTCATCATCATCATGGAATAGGTTCAGCTGAGGCATCACCAAATACACATTGCCCTGCAAGTCCTTATAGCTACACAGAGTCCTCATTCTATGGAGACCAAGGAATGTTTAGTCCGGATCGACATGGTTATGGAACTGCTCAAGGTCATGAAACTCAAGACAGAGAAACAAGGGTGGCGCGTGATGATACTCAAGAAGAAGCGGTCGCTACAAACAGCAACAATACTAACTCTGAAGCCACTTAG 2916 0.4187 MKNNVTRLLVVLLVGVVGVAAQAQGNKKNNGRAREVKVGAVLDVGVGMVGKMGLNSITMCINDFYVSNPRYKTRLQLVLRDSQRNVLTAAAQALDLIKNEQVEAIIGPVTPMEAMFVMNLGDKAHVPILTFSATSPTLSSIHTPYFFQIAQQDITQVEAITAIIQAFGWKEVVPIYVDNTYGQGLIPSLTNSLQKAYIRVPYLTPIDYSASDDAIEKELYKLMTMQTRVFVVHMTPPLGTRLFSIAKTIGMMDQGYVWIVTDGMANFFNSLDSSIMESMEGVLGVKPYIPRTKQLRDFRARWKRHFLRDNPTLVDINLNALGIWAYDATTALAMAVEKLDTTLSGFTHVSNNSSNVTDLENFGVSRNGEKLREALSNVRFKGVGGDFKLVGSGELQTSPFEIVNVIGNGERNIGFWMPQKGLIRNMDDKNSTTRTSAYSTCKKNLGTIIWPGDSYSVPKGWQIPTNGNRLRIGVPVKNSGYSEFVKVIHEPVTNSTTVRGFCIDVFNAVVLDALPYALPFDFIPFEKPNGEMAGTYDDLISQVYYGKFDAVVGDTTITANRSNYVDFTLPYTESGVTMVVPIRDNRKKNAWAFLKPLTWDLWVTTFCTFVFIGFVVWVLEHRINSHFRGPPSYQIGTSLWFSFSTIVFSHRERVASNCGRFVVIVWVFVVQILVQSYTASLTSLLTVEQLRPAITDVHQLLKNRLNVGYLEGSFVHEILKDLGFQEYQLKIYKSAEECNDLFTKGSANGGIDAAFDEVPYVTRLLQIYCSKYTMIEPKFKTGGFGFVFPKGSPLVSDISRAILNVTQGDKMKTIENAWLNGSSCPESSAQVSSASLGLESFWGLFLVIGVSCALALIIGTLLSIFNEKDMNSHTFKKSKLKQDASVASSPAHHHHGIGSAEASPNTHCPASPYSYTESSFYGDQGMFSPDRHGYGTAQGHETQDRETRVARDDTQEEAVATNSNNTNSEAT 971
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc435g00001 971 MobiDBLite consensus disorder prediction 927 971 - -
Stsc435g00001 971 MobiDBLite consensus disorder prediction 956 971 - -
Stsc435g00001 971 MobiDBLite consensus disorder prediction 881 909 - -
Stsc435g00001 971 FunFam Glutamate receptor 469 590 - -
Stsc435g00001 971 SUPERFAMILY Periplasmic binding protein-like II 446 821 - -
Stsc435g00001 971 FunFam Glutamate receptor 156 315 - -
Stsc435g00001 971 Pfam Receptor family ligand binding region 62 407 IPR001828 -
Stsc435g00001 971 MobiDBLite consensus disorder prediction 937 955 - -
Stsc435g00001 971 FunFam Glutamate receptor 590 720 - -
Stsc435g00001 971 PIRSF IGluLR_plant 1 964 IPR017103 -
Stsc435g00001 971 Gene3D - 67 159 - -
Stsc435g00001 971 Gene3D - 590 728 - -
Stsc435g00001 971 SMART GluR_14 469 821 IPR001320 GO:0015276|GO:0016020
Stsc435g00001 971 Gene3D - 470 589 - -
Stsc435g00001 971 SUPERFAMILY Periplasmic binding protein-like I 32 461 IPR028082 -
Stsc435g00001 971 FunFam Glutamate receptor 2.7 727 826 - -
Stsc435g00001 971 CDD PBP1_GABAb_receptor_plant 37 426 IPR044440 -
Stsc435g00001 971 Pfam Bacterial extracellular solute-binding proteins, family 3 498 820 IPR001638 -
Stsc435g00001 971 Gene3D - 327 469 - -
Stsc435g00001 971 FunFam Glutamate receptor 364 468 - -
Stsc435g00001 971 Gene3D - 160 317 - -
Stsc435g00001 971 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 36 880 IPR015683 -
Stsc435g00001 971 Pfam Ligand-gated ion channel 821 851 IPR001320 GO:0015276|GO:0016020
Stsc435g00001 971 CDD GluR_Plant 468 819 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc435g00001 Stsc-Chr435 3221 10326 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc435g00001 35 951 Ion Channels AT2G29120 48.835 0.0 870
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc435g00001 K05387 - qsa:O6P43_019170 1127.46