Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc434g00005 ATGAATAGAGGAGGTGGTGGTGTGGTTGAGCAAATCATGGGTGCCGGGAACCCTAACTGCTGGAACTCTTGTGTTTCTCCTGATTTGATGCCATACTCCTCCACTACTACTTCTCCTTCTTCTTCATACACAAACTTTCTTTTGAATCCACCAGCACCATATGCACCTCATCCTCCTCCCGCTTCTTCTCTTCCTTTATTCACTTCTAACTGGCATGGCGGCCATGAGCATGAGCAACACAATAATAATACTAATCCAGAGCTTCCCGATTACTCATGGACTCACCTAATCATGAGTGGAGTGGTGGGAGAAGAAGAGAATGGTAGAGGAGGTATTATATGGCAGCAGCAGCAGCATGCATCTGATGTGAAGCAAGAAAGTTCGGAAAAGAGCAGCTATGTGTACGGTGATGATGGAAGTGCAGGGAAACCTAACTGGTCTCATCATCATCATCAGATGTTACTGCTTCCTCCTAATAACAATGCTATTTCTTCATCACCCAAATCATCATCTTCTGTCACCCTCACCACCAACTTCTTGGACTTCTCCAACTCCCACACTCTGGCCACGCCTCCTCCACCTCCACCTCCACCTCCCCCTTCCGCCGAGTGCAATAGCAACACAGGTGGTGCTGGAGCACCGAAAAAAGCTAGGGTTCAACAGTCATCGTCTTCGTCTTCCTCGGTGTTCAAGGTTAGGAAGGAGAAGTTAGGTGACAGAATAGCAGCTCTCCATCAACTCGTTTCCCCATTTGGAAAGACTGACACTGCGTCTGTCTTATTAGAAGCTATTGGGTATATCAGATTCCTTCAGAGTCAAATTGAGGCCCTTAGCTTACCATACTTGGCCAATAATAATGGATCACCAAGCATCAGGCACCACCATCCTGTTCAAGGAGGAGAGAAGAATTGTTTATTCCCTGAAGACCCCGGTCAGGCACAAGTTGCTTCCTAA 954 0.4706 MNRGGGGVVEQIMGAGNPNCWNSCVSPDLMPYSSTTTSPSSSYTNFLLNPPAPYAPHPPPASSLPLFTSNWHGGHEHEQHNNNTNPELPDYSWTHLIMSGVVGEEENGRGGIIWQQQQHASDVKQESSEKSSYVYGDDGSAGKPNWSHHHHQMLLLPPNNNAISSSPKSSSSVTLTTNFLDFSNSHTLATPPPPPPPPPPSAECNSNTGGAGAPKKARVQQSSSSSSSVFKVRKEKLGDRIAALHQLVSPFGKTDTASVLLEAIGYIRFLQSQIEALSLPYLANNNGSPSIRHHHPVQGGEKNCLFPEDPGQAQVAS 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc434g00005 317 Gene3D - 220 284 IPR036638 GO:0046983
Stsc434g00005 317 MobiDBLite consensus disorder prediction 188 203 - -
Stsc434g00005 317 MobiDBLite consensus disorder prediction 115 134 - -
Stsc434g00005 317 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 231 283 IPR036638 GO:0046983
Stsc434g00005 317 CDD bHLH_AtbHLH_like 230 278 IPR045239 -
Stsc434g00005 317 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 221 270 IPR011598 GO:0046983
Stsc434g00005 317 FunFam Transcription factor bHLH123 family 231 295 - -
Stsc434g00005 317 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 91 288 - -
Stsc434g00005 317 MobiDBLite consensus disorder prediction 115 152 - -
Stsc434g00005 317 MobiDBLite consensus disorder prediction 183 230 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc434g00005 Stsc-Chr434 17294 22315 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc434g00005 179 314 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G29100 60.584 4.62e-40 142
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc434g00005 - - adu:107478609 311.997