Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc42g00027 ATGAACGACCTGTTTTCCGGTTCCTTCTCCCGCTTGCGCAACGAGCGCGCTTCACCGGACCGCCACCACGTCATCGAGATGTCCGCCGTCACGCCGGACGCCGCAGGCTCGGGCGGCGTCCACCTCGACAAGTTCTTCGACGACGTTGAAGGCGTTAAAGAGGAGCTTCGCGAAGTCGAGCGTCTTCTCGAGAGTCTCCAGAACAGCCACGAGCAGAGCAAGACGCTTCACAACGCCGCCGCCGTGCGTGACCTCCGGTCGCGAATGGACGCCGACGTATCGGCCGCGCTGAAGAAGGCGAAGGTGATCAAGCTCCGCCTAGAGGCGCTAGACCGGTCCAACGCTGCGAACCGGAACGTGCCTGGCTGCGGACCGGGTTCGTCGTCCGACCGGACGAGAACTTCAGTGGTTAACGGTTTGAAGAAGAAGCTGAAGGATTCGATGGAGAGCTTCAATGAATTGCGGCAGCAGATCTCGGCGGAGTATAGGGAGACGGTGCAGCGGCGGTACTTCACCGTCACCGGCGAGAATCCCGATGAGAAGACGCTCGATCTGTTGATCTCTACTGGTGAGAGTGAGACATTCCTTCAGAAAGCCATTCAAGAACAAGGCAGGGGAAGAATTCTTGACACCATCAATGAAATTCAAGAAAGGCATGATGCTGTCAAAGAGATAGAGAAGAATCTCAAGGAGTTGCACCAGGTGTTTCTTGACATGGCAGTGCTGGTGCAAACACAGGGCGAGCAATTAGACGATATTGAGAGCCACGTGGCGCGAGCTCATTCGTTTGTGCAAACCGGAACAGAGCGGTTGCAGACTGCAAGGAAGCACCAGAAGAACACCAGGAAATGGACCTGTTATGGTATCATACTGCTTCTAGTGATTATCTTGGTTGTGTTGCTGGCAGTTCTGAAACCATGGCAACATAATAGCAGCAGTGGTGGTGGTAGTCAGCCTGCTCCAGCTCAAACATCTCCACCGCCGCCGCCACCTCCGGCCAGTTCTTAA 1008 0.5556 MNDLFSGSFSRLRNERASPDRHHVIEMSAVTPDAAGSGGVHLDKFFDDVEGVKEELREVERLLESLQNSHEQSKTLHNAAAVRDLRSRMDADVSAALKKAKVIKLRLEALDRSNAANRNVPGCGPGSSSDRTRTSVVNGLKKKLKDSMESFNELRQQISAEYRETVQRRYFTVTGENPDEKTLDLLISTGESETFLQKAIQEQGRGRILDTINEIQERHDAVKEIEKNLKELHQVFLDMAVLVQTQGEQLDDIESHVARAHSFVQTGTERLQTARKHQKNTRKWTCYGIILLLVIILVVLLAVLKPWQHNSSSGGGSQPAPAQTSPPPPPPPASS 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc42g00027 335 CDD SNARE_syntaxin1-like 211 273 - -
Stsc42g00027 335 FunFam Syntaxin 132 205 305 - -
Stsc42g00027 335 Gene3D - 40 172 - -
Stsc42g00027 335 Gene3D - 209 305 - -
Stsc42g00027 335 PANTHER SYNTAXIN 53 297 IPR045242 -
Stsc42g00027 335 MobiDBLite consensus disorder prediction 310 335 - -
Stsc42g00027 335 Pfam SNARE domain 248 300 IPR000727 -
Stsc42g00027 335 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 212 274 IPR000727 -
Stsc42g00027 335 ProSitePatterns Syntaxin / epimorphin family signature. 218 257 IPR006012 GO:0005484|GO:0006886|GO:0016020
Stsc42g00027 335 SMART SynN_4 37 163 IPR006011 GO:0016020
Stsc42g00027 335 MobiDBLite consensus disorder prediction 321 335 - -
Stsc42g00027 335 Pfam Syntaxin 44 247 IPR006011 GO:0016020
Stsc42g00027 335 Coils Coil 42 76 - -
Stsc42g00027 335 Coils Coil 212 232 - -
Stsc42g00027 335 Coils Coil 137 161 - -
Stsc42g00027 335 CDD SynN 42 199 IPR006011 GO:0016020
Stsc42g00027 335 SMART tSNARE_6 207 274 IPR000727 -
Stsc42g00027 335 FunFam Qa-SNARE, Sso1/Syntaxin1-type, SYP12A-group 39 169 - -
Stsc42g00027 335 SUPERFAMILY t-snare proteins 40 267 IPR010989 GO:0016020|GO:0016192
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc42g00027 Stsc-Chr42 149838 152129 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc42g00027 34 333 SNARE and Associated Proteins AT3G11820 73.139 1.99e-153 431
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc42g00027 K08486 - gmx:100809258 488.804