Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc42g00014 ATGGATCATGAAATTGATGTTCCACCATTTTTTGTTTGCCCAATTTCATTGGAAATCATGAAGGATCCGGTGATTGTATCCACAGGAATCACCTATGATAGAGAGAGCATTGAGAAGTGGTTATTGAAGAACAAGACATGCCCGGTTACCAAGCAAGCCCTTGAGATTCTAGACCTAACTCCTAATCACACTCTTAGGAGATTGATTCAAGCATGGTGCACCTTGAATGCTTCTCATGGAGTTGAAAGAATTCCAACACCAAAGCCTCCAGTCAATAAAGAACAGGTATCAAAGCTCATCAAAGATGCTTCTTTATCTTCTTCTTCTAATGATGATCAAGATTCCTTGCTTGCTCAATGCCTTATGAGACTTAAATCCATGGCGGCCGAGAGCGAATCGAACCGGAGATGCATTGAATCGGCCGGTGCTGTTGAGTTCTTAGCTTCAATAGTTGTGATGAATCATAGCTATGATTCAATTGAGGCTAATTCGGATGGAGATGAAGGTTTCGACATGAAATCGGGTGTTTCGGATGAAGCTTTGAGCATACTTCACAATCTTCATTTATCAGAAAGTGGTTTGAAGGCCCTATTAGGGTTCAAAGATGGAATCTTTATTGATTCCTTGACAAGGGTGTTGCAAAGAGGAATCTATGAATCAAGGGCTTATGCGGTTTTCTTGTTGAAATCCATGTCCCAAGTTGCAAACCCTAATCAGCTTGTGAATCTTAGAAGTGAGTTGTTTGTGGAATTGGTTCAAGTTCTAAAGGATCAAATCACACAAAAGGCTTCAAAGGCGACACTACAAACCCTAATTGAGCTTTGTCCATGGGGAAGAAACCGGATCAAAGCGGTCGAATCCGGGGCGATCCATGTCCTAATTGAGCTTCTTCTTGATTGCAAAGAGAAGAAGCCATGTGAGATGATGATGGTGGTTTTGGATATTCTTTGCCAGAGCGCTGATGGAAGAGCCGAGCTTCTCAGCCACGCCGCCGGTTTGGCCGTCGTTTCTAAGAAGATTCTAAGGGTTTCAACAATGGTGAATGATAGGGCTGTGAAGATCTTGCTCTCAATTGCAAGGTACTCAGCAACACAAAGTGTTGTTCAAGAAATGTTGCTAATTGGTGTTGTTGCTAAGCTTTGTTTGGTTCTTCAAGTTGATAGTGGAAACAAGGCTAAGGAGAAAGCAAGGGAGATTCTCAAGCTTCATTCTAAGACATGGAGGAATTCTCCTTGCTTGCCTATCAATTTTCTTTCTGCATACCCTCTAAATTAG 1275 0.4196 MDHEIDVPPFFVCPISLEIMKDPVIVSTGITYDRESIEKWLLKNKTCPVTKQALEILDLTPNHTLRRLIQAWCTLNASHGVERIPTPKPPVNKEQVSKLIKDASLSSSSNDDQDSLLAQCLMRLKSMAAESESNRRCIESAGAVEFLASIVVMNHSYDSIEANSDGDEGFDMKSGVSDEALSILHNLHLSESGLKALLGFKDGIFIDSLTRVLQRGIYESRAYAVFLLKSMSQVANPNQLVNLRSELFVELVQVLKDQITQKASKATLQTLIELCPWGRNRIKAVESGAIHVLIELLLDCKEKKPCEMMMVVLDILCQSADGRAELLSHAAGLAVVSKKILRVSTMVNDRAVKILLSIARYSATQSVVQEMLLIGVVAKLCLVLQVDSGNKAKEKAREILKLHSKTWRNSPCLPINFLSAYPLN 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc42g00014 424 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 83 IPR013083 -
Stsc42g00014 424 ProSiteProfiles U-box domain profile. 6 79 IPR003613 GO:0004842|GO:0016567
Stsc42g00014 424 SUPERFAMILY ARM repeat 108 406 IPR016024 -
Stsc42g00014 424 FunFam RING-type E3 ubiquitin transferase 1 82 - -
Stsc42g00014 424 SUPERFAMILY RING/U-box 4 78 - -
Stsc42g00014 424 CDD RING-Ubox_PUB 8 59 IPR045210 -
Stsc42g00014 424 Pfam U-box domain 7 74 IPR003613 GO:0004842|GO:0016567
Stsc42g00014 424 SMART Ubox_2 10 72 IPR003613 GO:0004842|GO:0016567
Stsc42g00014 424 PANTHER WDSAM1 PROTEIN 3 414 IPR045185 GO:0061630
Stsc42g00014 424 Gene3D - 90 409 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc42g00014 Stsc-Chr42 81589 83149 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc42g00014 1 422 U-box Gene Family AT3G52450 55.756 2.12e-170 483
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc42g00014 - - gmx:100809123 588.186