Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc42g00013 ATGGATAATGAAATTGATGTTCCTGAGTATTTCATATGTCCAATTTCACTTCAAATCATGAAGGATCCTGTGACTGCCATAACAGGAATCACATATGATAGAGAAAGCATTGAGCAATGGCTTCTCAAGAACAAGAACACAACATGTCCAGTTACCAAAATGCCCCTACCTTCAGATTCTGATCTTACACCAAACCACACCCTTCGCCGTTTGATCCAAGCATGGTGCACTCAAAACTCTCAATTGGGTATCGATAGAATCCCAACGCCGAAGCCCCCACTTAACAAAGTTCAAGTCTTGAAGCTCCTTAGGGATCTTAAGGACCCAGCATTGAAGATCAAGAGCTTAAGGCAGTTGGAGATTCTTGCAGCTGAAAATGAGAGGAACAAGAAGTGTTTGATTGATTCCGGTGTTCCAAAAGCCATGATCATGTTCATATTGGATTGTTATTATAAAAAGGGTATCCAAGAAGGTGTTGAAGAAGCTCTTAGTTTGTTACAGTTTGTTAAGGTTTCTTCCGAAGAAGTTAAGGTTCTTATGTCGGAAAATTCTTTTGATTCCGTCTTGGATTCTCTAACATGGCTTCTAGGGTGCGAATTTTCGGAGAATTCGGCGACGGTGAAATCGCACGTTGTTCTAGTGATCAAAAACTTGATCCAAAGGGGCGATTCGAGCGTCATTCAGAGGCTTAAATTTGAATTCTTTGAGAAAATTGTGGCGGTTTTGAGAAACGGCGTTCTAACACAACGGGGAATTAGCGGCGCTTTGAAAGTGTTGCTAAGCGCCTGTTCGTACGGAAGAAACAGGATCATGATGGTGGAATGCGGTGCAGTTTTTGAGATAATTGAGATTGAAATGGGAACACCGGAGAAGATAATCAATGAATTAACAATGTCTATTCTTTTCCATCTATGTTCATGTGCTAGTGGAAGAGCTCAACTTTTGTGTCACAAAGGTTCAATGGCGGTTTTGACGGAAAGAATGTTGAAGGTTTCTGCGGCCGTTGATGATAGGGTCATAATTATTCTATCATTGATATCCAAATTTTCTGCTACAAATTCTGTGCTTCAAGAGATGTTGAAGATTGGAACCGTTGCAAAGCTTTGTTTGGTTCTTCAAAGTGATCATGCAAAGTACATCAAGGAAAAAGCCATGGAAATTATTAAGAATCATTCTGAGGTTTGGAGGAACTCTCCTTGTTTTCCTGAAAGGTCTTCTTTTTATGGAAAGTTTGCATAA 1239 0.4011 MDNEIDVPEYFICPISLQIMKDPVTAITGITYDRESIEQWLLKNKNTTCPVTKMPLPSDSDLTPNHTLRRLIQAWCTQNSQLGIDRIPTPKPPLNKVQVLKLLRDLKDPALKIKSLRQLEILAAENERNKKCLIDSGVPKAMIMFILDCYYKKGIQEGVEEALSLLQFVKVSSEEVKVLMSENSFDSVLDSLTWLLGCEFSENSATVKSHVVLVIKNLIQRGDSSVIQRLKFEFFEKIVAVLRNGVLTQRGISGALKVLLSACSYGRNRIMMVECGAVFEIIEIEMGTPEKIINELTMSILFHLCSCASGRAQLLCHKGSMAVLTERMLKVSAAVDDRVIIILSLISKFSATNSVLQEMLKIGTVAKLCLVLQSDHAKYIKEKAMEIIKNHSEVWRNSPCFPERSSFYGKFA 412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc42g00013 412 Gene3D - 96 398 IPR011989 -
Stsc42g00013 412 SUPERFAMILY ARM repeat 99 391 IPR016024 -
Stsc42g00013 412 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 84 IPR013083 -
Stsc42g00013 412 CDD RING-Ubox_WDSUB1-like 8 65 - -
Stsc42g00013 412 SMART Ubox_2 10 75 IPR003613 GO:0004842|GO:0016567
Stsc42g00013 412 FunFam RING-type E3 ubiquitin transferase 7 81 - -
Stsc42g00013 412 Pfam U-box domain 7 80 IPR003613 GO:0004842|GO:0016567
Stsc42g00013 412 PANTHER WDSAM1 PROTEIN 4 402 IPR045185 GO:0061630
Stsc42g00013 412 SUPERFAMILY RING/U-box 4 85 - -
Stsc42g00013 412 ProSiteProfiles U-box domain profile. 6 82 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc42g00013 Stsc-Chr42 70746 71984 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc42g00013 2 401 U-box Gene Family AT3G11840 39.955 1.70e-110 330
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc42g00013 - - lja:Lj0g3v0014579.1 560.451