Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc42g00012 ATGGCGACATATTTTCATGGTAATTCGGAAATTCAAGGTGGTGGTGTTGATGGAGGCCTTCAAACTCTTGTCCTCATGAACCCCGGTTACATACAATACTCCGACACACCGCCGCCGCCACACGGCGGAAACCTTATGCTTCTCAACTCTCTCACTGCCGCCGGAAACGCTTCCCTCAACCCTCATGCGCCACTTTCTCAACAATTCGTCGGCGTGCCTCTCGCGGCGGAGCAGTCTATGCAGGGCCACCATGACGTCTCGGTTGCCCTGCATGGCTACGCGCCGCGCGGGCATTACAACCTTTGGAACACAATTGATGCTACTACAGCCGCGCGTGATGCTACACGCGCCACACAAGGACTCTCTTTAAGCCTCCCAGCTATGTCGGGCGAAGACGTTCGAGTCTCCGGTGGGTCCCCGTCTTCTGCTTCCGGGGTTACCAACGGTGTTTCGGGGATTCAGAGTGTGCTATTGAATTCAAAGTACTTGAGAGCCACACAAGAGCTTCTAGAAGAAGTTGTGAATGTTAATAATAATATTAATGATATGAAGAAGAAGAGTTTTGAGAAGGCTAAGGTTGGTGTTGGAGAATCTTCAAGTGGTGGAGATGGTTCAGTTGGTGAAGGAAGTGAGAAGCGTTGTGCTGAGTTATCAGCCACAGAGAGACAAGAAATTCAGATGAAGAAAGCAAAGTTAATCACCATGCTTGATGAGGTGGAACAAAGGCAACAGAGAGCTATACAACAACTGGGAATGATCCATCACAATGCTTGGAGACCCCAGAGAGGACTCCCGGAGAGGTCGGTTTCCGTTCTGCGCGCTTGGCTGTTCGAACACTTTCTTCATCCTTATCCCAAGGATTCAGACAAACACATGCTTGCAAAACAAACAGGGCTTACAAGGAGCCAGGTGTCAAATTGGTTCATAAATGCAAGAGTTAGGCTTTGGAAGCCAATGGTTGAGGAAATGTACTTAGAGGAAATGAAGGATCATGAAATCAATAATAATAGTAACAACAATAATTCCTCTGAAGAAAACAACAAATCAAGCAAGAGCAATGAAGATCCAAAAAATGCTAAGAATTCGCCGCCGCGAGACAGCAACAACTCTGAATCCGAAACCAAGAAGATTTTCAACTTGAAACAAGACAACAACAGCGGCGAAAAGGCGAACAGTTCTGGATTCAGCTTCATGGGGTCATCATCAGAATTGTTAGATGGAATCACACAACAAGGTAGTAGTCCTAAGAAGCCAAGGAACAACAATGAAATTAATAGCAACAATGGCAATAATGATATTAGAGATAATGAATACTCATTCATCAACAATGTTGGGAGCCAAACAAACTTCATTGGTGGATTTGGACAATACCCTATTGATGAAATTGGAAGATTTGATTCTGCTGCTGAAAATTTCACAACAAGATTCTCAGGTAATAATGGTGTATCACTGACTCTTGGTCTTCCACATGGTGACACATTCCAGAACATTCAACTAGGAAGAAGATTGGAACATATGAGTGGTGAACAACAACATTCAAATGAGTTTGCTGCAGTTAACAACACTCCAAATCCTCATCACTCTTCAGCTGCATTTCAGAGTATGCAGAATTCAAAGAGGTTTGCTGCACAATTGTTGCCAGATTATGTGGCCTAA 1656 0.4463 MATYFHGNSEIQGGGVDGGLQTLVLMNPGYIQYSDTPPPPHGGNLMLLNSLTAAGNASLNPHAPLSQQFVGVPLAAEQSMQGHHDVSVALHGYAPRGHYNLWNTIDATTAARDATRATQGLSLSLPAMSGEDVRVSGGSPSSASGVTNGVSGIQSVLLNSKYLRATQELLEEVVNVNNNINDMKKKSFEKAKVGVGESSSGGDGSVGEGSEKRCAELSATERQEIQMKKAKLITMLDEVEQRQQRAIQQLGMIHHNAWRPQRGLPERSVSVLRAWLFEHFLHPYPKDSDKHMLAKQTGLTRSQVSNWFINARVRLWKPMVEEMYLEEMKDHEINNNSNNNNSSEENNKSSKSNEDPKNAKNSPPRDSNNSESETKKIFNLKQDNNSGEKANSSGFSFMGSSSELLDGITQQGSSPKKPRNNNEINSNNGNNDIRDNEYSFINNVGSQTNFIGGFGQYPIDEIGRFDSAAENFTTRFSGNNGVSLTLGLPHGDTFQNIQLGRRLEHMSGEQQHSNEFAAVNNTPNPHHSSAAFQSMQNSKRFAAQLLPDYVA 551
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc42g00012 551 Gene3D - 254 332 - -
Stsc42g00012 551 Coils Coil 166 186 - -
Stsc42g00012 551 CDD homeodomain 258 319 IPR001356 GO:0003677
Stsc42g00012 551 Coils Coil 222 249 - -
Stsc42g00012 551 ProSiteProfiles 'Homeobox' domain profile. 255 318 IPR001356 GO:0003677
Stsc42g00012 551 MobiDBLite consensus disorder prediction 193 214 - -
Stsc42g00012 551 FunFam BEL1-like homeodomain protein 9 261 323 - -
Stsc42g00012 551 MobiDBLite consensus disorder prediction 379 434 - -
Stsc42g00012 551 SUPERFAMILY Homeodomain-like 259 325 IPR009057 -
Stsc42g00012 551 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 80 348 - -
Stsc42g00012 551 SMART HOX_1 258 322 IPR001356 GO:0003677
Stsc42g00012 551 Pfam Associated with HOX 156 253 IPR006563 -
Stsc42g00012 551 Pfam Homeobox KN domain 275 314 IPR008422 GO:0003677|GO:0006355
Stsc42g00012 551 MobiDBLite consensus disorder prediction 331 434 - -
Stsc42g00012 551 SMART prehox3 151 278 IPR006563 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc42g00012 Stsc-Chr42 60617 64562 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc42g00012 242 551 Homeobox Transcription Factor Family AT2G35940 45.640 9.16e-67 227
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Stsc42g00012 POX 5.2e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc42g00012 - - gmx:100791773 383.645