Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc429g00001 ATGCCTCCTCCTCCTCCTCCTCCTACTCTTCCTCCTGATCAGCTTATTGATCCTTGGAGTAATGATGAAGTTCTTTCTCTCTTGAGGATCAGATCTACCATGGAGAGTTGGTTCCCACAACTCACTTGGGAACATGTCTCAAGGAAGATGGCAGAGCTTGGATATAAGAGGAGTGCTGAGAAGTGCAAAGAGAAGTTTGAAGAAGAAAGCAGATATTTCAGCAGTAACATTAACTTCACCAACAACAAGGCCACTACTCCTCCTCCTACTACTACTAGTTACCGTTTTCTCAGTGAACTTGAAGAGCTTTATCATCAACAAGATAGTGATCATCATCATCAGCAGCAGCAAGAAGTAGTAGTGGTGGAGAAGCAACCAAGTAGTGAGGAGCAGGAAGAAAAGGTTGTCATGAACCAAGCATTGGAGGAGGAAGAAGAAGATGATGATAAGGAGAATGAAGAGGTGGCCATGGCGGCGGTGTTGCCGGAGAAAGTTACAACAAAAACAAAGGAGAGGAAGAGGAAGAGGGGTGGCGATGGTGGTGACGACGGCAGCGTCAGCCGCGATGACGGGTTTAGGTTTGAGATGTTCAAGGGCTTTTGTGAGAGCATTGTGCACAAGATGATGGAGCAGCAAGAAGAGATGCACAACAAGCTGATAGAAGACATGGTGAGAAGGGATGAGGAGAAGCTTGCAAGGGAAGAGGCATGGAAGAAGCAAGAGGTGGAGAGAATGAACAAGGAGCTTGAGATCATGCAACAGGAACAAGCCATTGCTGGTGATAGACAAGCAAACATCATTGAGTTCTTGAAGAAATTTGCCCCAGATATTCAAAGCCTTGTTTCTGTTCAAGAAGATGGTGATGATAACAACAACAATGGAACAAGAGACAAATTAGTGAAGGAGGTAATAACAACAAATACTAATGTTGAACTTGAACACAATGGTTCAAATTTAAACTCAAATTCCACTGGTACTCCATTGTTGTTGCACTCCCAAAACCCTAATCCATCATCACCTTCTTCTTCTTCTGCTGTGATTCTCAATAATAACCAAAATGCTGTTATTGCTGCTGCTTCTTCTTCTTCAACAAACCCTATAATACAAGACACATTACAAGCTCCTTCTTCTGCTTCTAAAGCTGGCAAGAACCCTAATCTCATCAATGATACGGAAGCTGCAAACCGTGAGAAAGATGACATTGGAAGAAGATGGCCAAAAGATGAAGTGTTGGCACTGATAAATCTCAGGTGCAACACCCAAATGAGCAACAATAACAACAATGATGAAAACAACAACAACAACAAGGCTCTTCCATTGTGGGAGAGAATCTCACAAGGGATGCTTGAATTGGGGTACAAAAGGAGTGCAAAGAGGTGCAAAGAGAAATGGGAGAACATAAACAAGTACTTCAGAAAAACCAAAGACACCAACAAAAAGAGGTCCCTTGATTCAAGGACTTGTCCCTATTTCCATCTTCTGAGTAACCTCTATAGCCAAGGGAAGCTTGTTCTTCAACCTGAGAAGCAAGAAACTACCACCACTAATAATAATGATAACCATGAAAAAATGGTGACAGATCAAACTTCTTCACAAATGGGGTATGCTGCTGGTGATGGTATTAATGCTGGCGATAAGTTCACCATGGAGGTTGATGATGATGATAATCATGGAGGTGAGAATAATAATAACAATAATAATAATAATAATAATAATAATAAATCTTTAATGCAACAAGTACCTTCTTTGGATTTTGATCAGTTTTAA 1767 0.4131 MPPPPPPPTLPPDQLIDPWSNDEVLSLLRIRSTMESWFPQLTWEHVSRKMAELGYKRSAEKCKEKFEEESRYFSSNINFTNNKATTPPPTTTSYRFLSELEELYHQQDSDHHHQQQQEVVVVEKQPSSEEQEEKVVMNQALEEEEEDDDKENEEVAMAAVLPEKVTTKTKERKRKRGGDGGDDGSVSRDDGFRFEMFKGFCESIVHKMMEQQEEMHNKLIEDMVRRDEEKLAREEAWKKQEVERMNKELEIMQQEQAIAGDRQANIIEFLKKFAPDIQSLVSVQEDGDDNNNNGTRDKLVKEVITTNTNVELEHNGSNLNSNSTGTPLLLHSQNPNPSSPSSSSAVILNNNQNAVIAAASSSSTNPIIQDTLQAPSSASKAGKNPNLINDTEAANREKDDIGRRWPKDEVLALINLRCNTQMSNNNNNDENNNNNKALPLWERISQGMLELGYKRSAKRCKEKWENINKYFRKTKDTNKKRSLDSRTCPYFHLLSNLYSQGKLVLQPEKQETTTTNNNDNHEKMVTDQTSSQMGYAAGDGINAGDKFTMEVDDDDNHGGENNNNNNNNNNNNNKSLMQQVPSLDFDQF 588
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc429g00001 588 MobiDBLite consensus disorder prediction 161 189 - -
Stsc429g00001 588 MobiDBLite consensus disorder prediction 508 588 - -
Stsc429g00001 588 Gene3D - 405 473 - -
Stsc429g00001 588 Gene3D - 19 74 - -
Stsc429g00001 588 ProSiteProfiles Myb-like domain profile. 404 468 IPR001005 -
Stsc429g00001 588 CDD GT1 403 475 - -
Stsc429g00001 588 Coils Coil 235 255 - -
Stsc429g00001 588 PANTHER FI21293P1 18 566 - -
Stsc429g00001 588 Pfam Myb/SANT-like DNA-binding domain 17 78 IPR044822 -
Stsc429g00001 588 Pfam Myb/SANT-like DNA-binding domain 403 495 IPR044822 -
Stsc429g00001 588 MobiDBLite consensus disorder prediction 374 391 - -
Stsc429g00001 588 Coils Coil 127 147 - -
Stsc429g00001 588 MobiDBLite consensus disorder prediction 313 344 - -
Stsc429g00001 588 ProSiteProfiles Myb-like domain profile. 18 70 IPR001005 -
Stsc429g00001 588 MobiDBLite consensus disorder prediction 165 189 - -
Stsc429g00001 588 MobiDBLite consensus disorder prediction 560 588 - -
Stsc429g00001 588 MobiDBLite consensus disorder prediction 508 536 - -
Stsc429g00001 588 MobiDBLite consensus disorder prediction 374 400 - -
Stsc429g00001 588 FunFam Trihelix transcription factor GT-2 19 75 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc429g00001 Stsc-Chr429 12997 15383 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc429g00001 18 500 Trihelix Transcription Factor Family AT5G28300 41.031 7.43e-98 309
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Stsc429g00001 Myb_DNA-bind_4 1.3e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc429g00001 - - ahf:112775947 647.121