Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc42957g00001 ATGAACCCTATAGATACACATTTGAGCACTTTTGTCAATGGTGAGTTTGGAGACTTAGGCTATGTTGCTCCAGAGTACACAAGAACCTTGGTTGCTACACCAAAGGGTGATGTTTATAGCTTCGGCACCGTGCTTCTCGAGCTGGTAACCGGCGAAAGACCTACCCATGTGGCTAAAGCTCCGGAAACATTCAAAGGGAACCTTGTAGAGTGGATTATGCAGCTCTCGAGCAACGCTCAACTCCACGACGCCATCGATGA 260 0.4808 MNPIDTHLSTFVNGEFGDLGYVAPEYTRTLVATPKGDVYSFGTVLLELVTGERPTHVAKAPETFKGNLVEWIMQLSSNAQLHDAID 86
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc42957g00001 86 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 5 86 - -
Stsc42957g00001 86 Pfam Protein kinase domain 12 74 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc42957g00001 86 SUPERFAMILY Protein kinase-like (PK-like) 9 74 IPR011009 -
Stsc42957g00001 86 Gene3D Transferase(Phosphotransferase) domain 1 1 86 - -
Stsc42957g00001 86 ProSiteProfiles Protein kinase domain profile. 1 86 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc42957g00001 Stsc-Chr42957 84 343 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc42957g00001 5 86 Receptor kinase-like Gene Family AT1G27190 56.098 4.83e-27 100
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xa Stsc42957g00001 Pkinase 5e-08 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc42957g00001 - - jre:109003665 169.859