Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc427g00008 ATGAAAAAGGTTGGCAGTGCCGTCAAAATCCGTAAACACCATGTGACTATTCATTCATTCATTCATTCTATTCCATTTCCATCCCTTCCAAAAACAATAAACAAACACGTTTCTTTGAAACTTGAAAGCACACTTCACTCCCCTTTACTTCCCCTTCAATTTATCATCACAATTCTTCAATATAAGTATCATCCTTTTTTTTTTTCTTTCTTTTTTTTCTTTTTTCCTCCTTCAATCCTCTGCCTCAAGCACAAGTCCAACCGTCCTCTTATGGCAAAAACACTGCTCCTTCTTTTTGTCCTCTTAACTCTGTTCTCAAGAATAACTCACCAACAAGAGCTCTTCTTTGAAGGCTTCAATGGCGTTGAAGCCGCCGCAAAGATGTCCCTAAACGGCGGCGCAGTCATTCACCAAAGCGGAACACTTGGTTTAACAAACGACACTCAGAGGGTGCTTGGTCACGCGTTTTACTCAACCGCAATCCAATTCAAGAACAACAGCAAAGTTGTGTCCTTTTCCACGGCATTTGCATTCGCAATAGTCCCTCAGTACCCAACACTCGGTGGCCATGGCTTCGCCTTCACCATTTCTCCCTCCAAGGACCTTCCCAACGGTTACCCAAGCCAGTACATGGGCCTCCTGGGCCCAAAAAACGTCGGCAACTTCTCCAACCACCTGTTCGCCGTGGAGTTCGACACCGTCCAAGACTTCGAGTTTGGAGACATCAATGACAACCATGTCGGCATTAACCTCAACAACATGGCCTCCAATAAATCCGTTAAAGCAACGGTGAACTTGAAGAGTGGCAAAGTGATTCAAGCATGGGTTGATTATGACTCCTCAAACAACCAATTGGAGGTTCGTCTCTCCCAAACTTCAATAAAACCCAATTCTCCAATCTTATCCTACCAAGTTGATCTCGCACCCATTCTCAAAGATTCCATGTACGTTGGGTTCTCCTCTTCAACAGGCCTGCTAGCTAGCTCTCACTATATCTTGGGCTGGAGCTTCAACATCAACAACAACAATGGAGACGCCAAAGCCAAAACCCTCTCCTTAAAGAACCTCCCTCCACTCCCTTCACGAGGCAAACCCCATAGAAGGGCCTTAATCTTAGGGCTCTGTCTTTCAGCTTCGATATTCCTCCTCTGCTCCATTGCCGTACCATTCTACCTCATCAGAAAGCTGAGAAACAAAGAAGTAATCGAACCATGGGAGCTAGAAGTTGGTCCACACAGGTTCCGCTACAAGGAACTGAAGAAAGCTACTAGAAACTTCCACCACAAGAACATGCTGGGCTTCGGGGGATTCGGCGCGGTTTTCAAGGGAACACTGGAAAACAACACGGAAATCGCAGTGAAGCGAGTCTCCCATGACTCCAAACAGGGATTCCAAGAATTCGTATCGGAAATCGAGACCATAGGCAGGTTGCGACACAGGAACCTCGTACAGCTGCTAGGTTGGTGCAGAAACCGCGTGGATCTTCTATTAGTGTACGACTTCATGCCAAACGGAAGCTTGGACAAGCACCTATTCCAAGATTCATCAAGAAAAACGCTAACATGGGAACAGAGGTTCAAGATTGTGAAGGGTGTGGCCAGCGGACTCTTGTACCTCCACGAGGAATGGGAACAGACGGTGATTCACAGGGATGTTAAAGCAGGGAACGTTCTGTTGGACGCTGACATGAACGCGCGCCTCGGCGACTTTGGTTTGGCCAAGCTATACGACCGTGGTTCCAACCCGACCACCACCAGGGTGGTAGGGACGCTGGGCTACCTTGCGCCGGAGCTAACGAAGACGGGGAGGCCAAGCACGTCTTCTGATGTTTATGCGTTTGGGGCGCTGCTGTTGGAGGTGGTGTGCGGGAGGAGGCCGGTGGAGGCGAAGGCGATGCCGGAGGAGCTTATTCTTGTGGAGTGGGTGTGGGAGCGGTGGCGCGTGGGGGCGGTGTTGGAGGTGGTGGACCCCAAGCTTGGGGGAGTTTATGATGTGCTGGAGGTTGTGGTGATTATTAAGTTGGGGTTGTTGTGTTCCTGTGAAGTGCCGGAAATGAGGCCAAGTATGAGGCAGGTTGTGAGGTTCTTGGAAGGGGAGGTCCCGTTGCCGGAGGTGATTCCGCCTCCCGATGGCTTTGGTGGTGGAAAGGCTGCTGCTACTGCTTATGGCGGGAACACGTGGCTGTCGGCGGTTGATGATGACGTGGAGGATGGATCCGGTTTGTCTGTTTTGCTTTCTGGTACAGGGGATGAGGGTAGGTAG 2262 0.4965 MKKVGSAVKIRKHHVTIHSFIHSIPFPSLPKTINKHVSLKLESTLHSPLLPLQFIITILQYKYHPFFFSFFFFFFPPSILCLKHKSNRPLMAKTLLLLFVLLTLFSRITHQQELFFEGFNGVEAAAKMSLNGGAVIHQSGTLGLTNDTQRVLGHAFYSTAIQFKNNSKVVSFSTAFAFAIVPQYPTLGGHGFAFTISPSKDLPNGYPSQYMGLLGPKNVGNFSNHLFAVEFDTVQDFEFGDINDNHVGINLNNMASNKSVKATVNLKSGKVIQAWVDYDSSNNQLEVRLSQTSIKPNSPILSYQVDLAPILKDSMYVGFSSSTGLLASSHYILGWSFNINNNNGDAKAKTLSLKNLPPLPSRGKPHRRALILGLCLSASIFLLCSIAVPFYLIRKLRNKEVIEPWELEVGPHRFRYKELKKATRNFHHKNMLGFGGFGAVFKGTLENNTEIAVKRVSHDSKQGFQEFVSEIETIGRLRHRNLVQLLGWCRNRVDLLLVYDFMPNGSLDKHLFQDSSRKTLTWEQRFKIVKGVASGLLYLHEEWEQTVIHRDVKAGNVLLDADMNARLGDFGLAKLYDRGSNPTTTRVVGTLGYLAPELTKTGRPSTSSDVYAFGALLLEVVCGRRPVEAKAMPEELILVEWVWERWRVGAVLEVVDPKLGGVYDVLEVVVIIKLGLLCSCEVPEMRPSMRQVVRFLEGEVPLPEVIPPPDGFGGGKAAATAYGGNTWLSAVDDDVEDGSGLSVLLSGTGDEGR 753
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc427g00008 753 FunFam L-type lectin-domain containing receptor kinase S.4 110 345 - -
Stsc427g00008 753 PANTHER - 103 703 - -
Stsc427g00008 753 Gene3D Transferase(Phosphotransferase) domain 1 502 706 - -
Stsc427g00008 753 SUPERFAMILY Protein kinase-like (PK-like) 408 708 IPR011009 -
Stsc427g00008 753 ProSitePatterns Serine/Threonine protein kinases active-site signature. 547 559 IPR008271 GO:0004672|GO:0006468
Stsc427g00008 753 FunFam L-type lectin-domain containing receptor kinase S.4 502 708 - -
Stsc427g00008 753 Gene3D - 114 356 - -
Stsc427g00008 753 CDD lectin_legume_LecRK_Arcelin_ConA 116 340 IPR001220 GO:0030246
Stsc427g00008 753 ProSitePatterns Protein kinases ATP-binding region signature. 432 454 IPR017441 GO:0005524
Stsc427g00008 753 ProSiteProfiles Protein kinase domain profile. 426 705 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc427g00008 753 Pfam Legume lectin domain 115 349 IPR001220 GO:0030246
Stsc427g00008 753 SMART serkin_6 426 696 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc427g00008 753 SUPERFAMILY Concanavalin A-like lectins/glucanases 112 340 IPR013320 -
Stsc427g00008 753 FunFam serine/threonine-protein kinase PBS1-like 394 501 - -
Stsc427g00008 753 Pfam Protein kinase domain 426 631 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc427g00008 753 CDD STKc_IRAK 432 698 - -
Stsc427g00008 753 Gene3D Phosphorylase Kinase; domain 1 411 501 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc427g00008 Stsc-Chr427 36704 38965 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc427g00008 112 710 Receptor kinase-like Gene Family AT3G55550 58.442 0.0 726
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Stsc427g00008 Pkinase 1.1e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc427g00008 - - adu:107480854 1191.02