Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc425g00008 ATGGTATCCAAAAACCCGAACCCGCCAGAGGGCTTCTACTTGGACCCCACCGGCGCCGCTCTCCCCGGTCTCGCACCTTTTGCCTCCGTCACTGCCGCCGCCACCGCCACCGCTGTCTCTGCCCCTAACTCCTCCGACGACGCCGCAAAGAAAATCCGCAAGCCCTACACTATCACCAAGTCCAGGGAGAATTGGACTGAACCCGAACACGACAAGTTCCTCGAAGCCCTTCAACTGTTTGATCGGGACTGGAAAAAGATTGGAGCATTTGTTGGATCAAAGACAGTTATACAGATACGTAGTCATGCACAGAAATATTTCATAAAAGTTCAGAAGAGTGGGACAAGTGAACATCTTCCTCCACCCAGGCCGAAAAGAAAAGCTGCCCATCCTTATCCTCAAAAGGCTTCCAAAAATGAATCTTTTCCATCTTCATCTGCTTTGCTTGAATCTGGATATGTACTGAAACATGATCCCTCCACAATGCTTCAAGCTCCTAATGTGAACACTGTGGTGCCTTCATGGTCAAACTCCACCTTGCAAACCACTAATTTACAGCATGTACCGAAAGTGAACAACCTTTCCGGTAGCAGTGAGAGTACTCCCAGAGTGCAGCCAGGTGATGAATCTAATGGACAAGGGACTGCTAGCTTTCCATTAAGAGTGCTTCCAGATTTCACCCAGGTATACAGCTTCATTGGCAGTGTATTTGATCCAAATAAAACTGATCATCTACACAAACTGAAAAATATGGACCGTATAGACGTTGAGACGGTCCTGTTGTTGATGAGAAATCTCTCTATCAATTTAACTAGCCCAGATTTTGAGGACCATAGGAAAGTGCTTTCAACATACGAGGTTGAACTTGATACCGATGATTACATCAATGCAGATATACTTCAGGATGATCAGTTGAAGAGTGCTACCTAG 930 0.4624 MVSKNPNPPEGFYLDPTGAALPGLAPFASVTAAATATAVSAPNSSDDAAKKIRKPYTITKSRENWTEPEHDKFLEALQLFDRDWKKIGAFVGSKTVIQIRSHAQKYFIKVQKSGTSEHLPPPRPKRKAAHPYPQKASKNESFPSSSALLESGYVLKHDPSTMLQAPNVNTVVPSWSNSTLQTTNLQHVPKVNNLSGSSESTPRVQPGDESNGQGTASFPLRVLPDFTQVYSFIGSVFDPNKTDHLHKLKNMDRIDVETVLLLMRNLSINLTSPDFEDHRKVLSTYEVELDTDDYINADILQDDQLKSAT 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc425g00008 309 ProSiteProfiles Myb-like domain profile. 57 107 IPR001005 -
Stsc425g00008 309 MobiDBLite consensus disorder prediction 112 144 - -
Stsc425g00008 309 CDD SANT 64 107 IPR001005 -
Stsc425g00008 309 MobiDBLite consensus disorder prediction 190 217 - -
Stsc425g00008 309 Pfam Myb-like DNA-binding domain 62 107 IPR001005 -
Stsc425g00008 309 PANTHER SWI/SNF COMPLEX-RELATED 33 271 - -
Stsc425g00008 309 SMART sant 61 109 IPR001005 -
Stsc425g00008 309 FunFam protein REVEILLE 6 isoform X1 64 112 - -
Stsc425g00008 309 SUPERFAMILY Homeodomain-like 56 112 IPR009057 -
Stsc425g00008 309 Gene3D - 64 112 - -
Stsc425g00008 309 ProSiteProfiles SANT domain profile. 60 111 IPR017884 -
Stsc425g00008 309 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 57 111 IPR017930 -
Stsc425g00008 309 NCBIfam myb-like DNA-binding domain, SHAQKYF class 60 109 IPR006447 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc425g00008 Stsc-Chr425 25512 29057 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Stsc425g00008 Myb_DNA-binding 1.6e-10 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc425g00008 - - gmx:100783949 424.091