Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc425g00006 ATGGCAACCTTCCAAAAGGCTCATAGTATTCTCTTTCACATACTATTGATATCTTCACTTCAATTTAAGACAACAATCACAGCATCATCACCAATAACAGAAGTAGAAGCAGAAGCACTTCTTAAATGGAAAAACACTCTCTCACTTCCTCTTCCTCCTTCTCTTAACACATGGTCGCATGCAAACCTTAACAGTCTTTGCAATTGGCATGCCATTGTTTGTGACAAAACAAACACAACAATCTCACAGATAAACCTTTCTAGTTCCAATCTCTCTGGCACCCTTAATGCCTTTTCTTTCACTTCTTTTTCAAACCTCACTCTTCTCAGCCTCAATGGTAATAGCCTTAAAGGGTCATTGCCATCTTCAATTGGCAGCCTCTCTAAGCTCACTTTCTTCGACTTGGGAAACAACTTATTTGCAGGTACACTTCCTTCTGAACTAGGCCACTTAATGGAGCTTCAGTATCTCAATTTTCACAGTAACAGTTTCAATGGCACCATTCCATATCAGCTCACGTATCTCCCCAAGGTATGGCACATGGACTTTGGATCAAATTACTTTGCATCTCCTCCTAAGTGGTCTCAATATTCAGGCATGCCTTCATTAACATACCTTGACTTGCATACAAATAAGCTCACTTCAGAATTCCCAAGTTTCATATTAGATTGCCACAACTTAACTTACCTTGACCTCCGCCATAACCAGTTTAATGGCACAATATCAGAATCTATGTACACAAATTTGGCCAAGCTTGAATATCTCAACCTCACAAACTGTGGTTTGGAAGGACCACTATCATCAAACTTTTCGAAGCTCTCTAATCTTAAAGAGCTTCTTATAGGCCGTAACAACTTCTCCGGTCCTATTCCGAAAGAAATAGGATTCATATCTGGACTTCAACACCTTGAAATGCAAAACATTTCAGCCTATGGCGAAATCCCTTCCTCCATAGGTCAACTCAAGGAGCTAAAGTATCTTGATCTCAGTAATAACTTTTTGAAATCTTCAATCCCTTCTGAGCTTGGCCTATGCACTAGTCTCACCTTCCTGGCATTAGCATTTAACAATCTTACCGGTCCCTTGCCGTTATCATTATCCAATTTATCCAAAATTTCAGAGTTAGGACTATCCCACAATTCCTTTTCCGGTCGAATTTCGGCTTCACTGATCTCTAACTGGACTGAATTGATATCTTTGCAACTCCAAAACAATAAATTTACTGGAGAGATTCCTCCTGAGGTCGGCCGGTTGAAAAAAATTAAATACCTCTACCTTTACAGAAATCAATTCTTTGGTCAAATCCCTGGGGAGATTGGAAACTTGAAGGAAATGACAGAGTTAGATCTTTCAGTAAACCGCTTTTCCGGTACAATTCCATCAACCATATGGAATCTCACAAACATCACAACAATATCCCTTTTCTTCAATGAGCTCTCTGGAGCCATTCCAAGGGAAATTGGAAACTTGAAGTCACTGCAATACTTTGATGTTGACAATAACAATTTGGATGGAGAGTTGCCAGACACCATAGCTAAACTAACTGCTTTGAGATATTTTTCTGTTTTCACCAATAACTTCTCAGGAAGCATTACCAGAGATTTTAGAAAGTATAGTCCTTATTTAGGAAAAGTCTTCCTTAAAAATAACAGCTTCACAGGAGAGCTGCCACCTGACCTGTGCAGTGGTATGATGCTAACTGCCCTGGTAGTCAATAACAACAGCTTTTCCGGGACATTACCGAAGTCATTGACAAATTGTTCCAAACTGACTAAAATAGCACTTAATGATAATCAATTCTCTGGAAACATCACAGAAGTCTTTGGTGTATATCCAAGTCTTGTTTCTATCAATCTCAGTGGAAATAAGCTTGTTGGTGAAGTCTCCCCTTTGTGGGGTGAATGTGAGAATCTAACTGAAATACAAATGAGTCAAAACAAACTTTCAGGGAAAATTCCATCTGAGCTAAGTAAGTTGAGTCAGTTACAAGTTCTAACTCTGGACTCCAATGAATTCACAGGCAATGTTCCACTAGAGTTGGGAAATCTAAGCAAGCTCTACGAGTTAAACTTGAGCAGGAACAATTTGTTAGGCGAAATCCCCCGGAGTATCGGCCAATTAGCTCACCTTTCTGAACTTGATTTGTCGGATAATAAATTCAGTGGAAGCATCCCTAAAGAGCTTAGCAATTGTCATGACTTACAAAGCATGAATTTAAGCCACAACAATCTTTCAGGGGAGATTCCATCTGAACTTAGCAATCTGTTCTCACTCCAGTATTTCTTGGACCTCAGTGGTAACTGTCTTTCAGGGGAAATTCCTCAAGACCTTGGAAAGCTCATAGCATTGGAGATTCTCAATGTCTCACACAACCATCTGTTTGGTACAATACCAAATTCCTTGTTGGGCATGCTTAGCATTCAATCTGTTGATTTTTCTTACAACAATTTGACTGGTTTAGTTCCAACTTTTAGCATTTCACAAACAGCAAATGGTGAAGCTTATGTTGGGAACCCTGGTTTGTGTGGCGATGTAAGAGGTTTACAACAATGCTTCAAAGACAAAGCCAGAGGAGTAAACACGAAGATTATTCTTGGTGTTATTCTACCAGTTTGTGGCTTGCTGTTAGGGGTGATTTGTGTTGGAATAGTCCTGTTCCGAGAGAAATGCAGACTGCATGATGAAGAGTCCAACAGCACTCAATATAATGACCAATCAATTTGCATGGTGTGGGGAAAAGATGGAGAATTCACATTTTCTGAACTTGTCAAAGCCACCAATGACTTCGATGGCGAGTTCTGCATTGGAAAAGGAGGATTTGGAAGTGTTTACAAGGCAGAATTACCAACAGGTCAAGTTGTTGCTGTCAAAAGGTTTAGTAGTATCTCAAACTTCGATGACATTCCGGCTATGAATCGCCGGAGTTTTGAGAATGAGATAAGAACACTAACAGGAGTGAGGCACCGCAACATAATCAAGCTTTATGGTTTCTGTTGCAGGAAGAAACACATGTTCTTGGTTTTTGAATATGTAGAGAGGGGAAGCTTAGGAAAAATGTTGTCTGGAGAGGAAGGAAAATCAGAGCTGAGTTGGTCTAAAAGGGTGAGAATTCTTCAGGGTATAGCAAATGCAGTTTCCTACCTGCATAATGATTGTTCAACACAAGTTGTGCACCGAGATATTACACCGAATAACATACTGCTAGACTCAGACTATGAACCTCATCTTGCAGATTTTGGCACTGCAAAGCTGTTAAGTTCCAACAACACTTCAAGTTGGACCACCCTAGCAGGTTCTTATGGCTATATGGCTCCAGAGTTAGCACAAACTATGAAGGTAACTGAAAAGTGTGATGTGTATAGTTTTGGAGTGGTGGCATTAGAGATAATAATGGGAAAACACCCTGCAGAACTCTTAACAAACCTTTCATCAAACATGTCACGGTCATTAATGGAGGATCAAGAGGTGCTTGTGAAGGATGTTCTAGACCAACGGCTTCCACCTCCAATAGGGCAAATAGCTGAAGCAGTGATGTTAGCAGTGACCATAGCTATGGCATGCACAAATGCATCGCCAGAGTGTAGACCCACCATGCATTCTGTAGCACAAAAGCTATCTGCTATTAACTACTAA 3633 0.4021 MATFQKAHSILFHILLISSLQFKTTITASSPITEVEAEALLKWKNTLSLPLPPSLNTWSHANLNSLCNWHAIVCDKTNTTISQINLSSSNLSGTLNAFSFTSFSNLTLLSLNGNSLKGSLPSSIGSLSKLTFFDLGNNLFAGTLPSELGHLMELQYLNFHSNSFNGTIPYQLTYLPKVWHMDFGSNYFASPPKWSQYSGMPSLTYLDLHTNKLTSEFPSFILDCHNLTYLDLRHNQFNGTISESMYTNLAKLEYLNLTNCGLEGPLSSNFSKLSNLKELLIGRNNFSGPIPKEIGFISGLQHLEMQNISAYGEIPSSIGQLKELKYLDLSNNFLKSSIPSELGLCTSLTFLALAFNNLTGPLPLSLSNLSKISELGLSHNSFSGRISASLISNWTELISLQLQNNKFTGEIPPEVGRLKKIKYLYLYRNQFFGQIPGEIGNLKEMTELDLSVNRFSGTIPSTIWNLTNITTISLFFNELSGAIPREIGNLKSLQYFDVDNNNLDGELPDTIAKLTALRYFSVFTNNFSGSITRDFRKYSPYLGKVFLKNNSFTGELPPDLCSGMMLTALVVNNNSFSGTLPKSLTNCSKLTKIALNDNQFSGNITEVFGVYPSLVSINLSGNKLVGEVSPLWGECENLTEIQMSQNKLSGKIPSELSKLSQLQVLTLDSNEFTGNVPLELGNLSKLYELNLSRNNLLGEIPRSIGQLAHLSELDLSDNKFSGSIPKELSNCHDLQSMNLSHNNLSGEIPSELSNLFSLQYFLDLSGNCLSGEIPQDLGKLIALEILNVSHNHLFGTIPNSLLGMLSIQSVDFSYNNLTGLVPTFSISQTANGEAYVGNPGLCGDVRGLQQCFKDKARGVNTKIILGVILPVCGLLLGVICVGIVLFREKCRLHDEESNSTQYNDQSICMVWGKDGEFTFSELVKATNDFDGEFCIGKGGFGSVYKAELPTGQVVAVKRFSSISNFDDIPAMNRRSFENEIRTLTGVRHRNIIKLYGFCCRKKHMFLVFEYVERGSLGKMLSGEEGKSELSWSKRVRILQGIANAVSYLHNDCSTQVVHRDITPNNILLDSDYEPHLADFGTAKLLSSNNTSSWTTLAGSYGYMAPELAQTMKVTEKCDVYSFGVVALEIIMGKHPAELLTNLSSNMSRSLMEDQEVLVKDVLDQRLPPPIGQIAEAVMLAVTIAMACTNASPECRPTMHSVAQKLSAINY 1210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc425g00006 1210 Gene3D Ribonuclease Inhibitor 390 510 IPR032675 -
Stsc425g00006 1210 SUPERFAMILY RNI-like 525 822 - -
Stsc425g00006 1210 CDD STKc_IRAK 935 1205 - -
Stsc425g00006 1210 FunFam Nuclear pore complex protein NUP107 33 193 - -
Stsc425g00006 1210 ProSiteProfiles Leucine-rich repeat profile. 323 345 IPR001611 GO:0005515
Stsc425g00006 1210 SMART LRR_typ_2 490 514 IPR003591 -
Stsc425g00006 1210 SMART LRR_typ_2 707 731 IPR003591 -
Stsc425g00006 1210 SMART LRR_typ_2 683 706 IPR003591 -
Stsc425g00006 1210 SMART LRR_typ_2 442 466 IPR003591 -
Stsc425g00006 1210 SMART LRR_typ_2 780 804 IPR003591 -
Stsc425g00006 1210 SMART LRR_typ_2 127 151 IPR003591 -
Stsc425g00006 1210 SMART LRR_typ_2 200 224 IPR003591 -
Stsc425g00006 1210 SMART LRR_typ_2 321 345 IPR003591 -
Stsc425g00006 1210 SMART LRR_typ_2 103 126 IPR003591 -
Stsc425g00006 1210 Gene3D Phosphorylase Kinase; domain 1 891 1010 - -
Stsc425g00006 1210 Gene3D Transferase(Phosphotransferase) domain 1 1011 1210 - -
Stsc425g00006 1210 SUPERFAMILY L domain-like 389 557 - -
Stsc425g00006 1210 FunFam Leucine-rich repeat receptor protein kinase MSP1 892 1010 - -
Stsc425g00006 1210 FunFam MDIS1-interacting receptor like kinase 2 1011 1209 - -
Stsc425g00006 1210 Pfam Protein kinase domain 935 1203 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc425g00006 1210 FunFam MDIS1-interacting receptor like kinase 2 372 538 - -
Stsc425g00006 1210 PANTHER LEUCINE RICH REPEAT KINASE 2 502 1207 - -
Stsc425g00006 1210 FunFam Leucine Rich Repeat family protein, expressed 194 290 - -
Stsc425g00006 1210 ProSitePatterns Protein kinases ATP-binding region signature. 935 957 IPR017441 GO:0005524
Stsc425g00006 1210 SMART LRR_sd22_2 635 658 - -
Stsc425g00006 1210 SMART LRR_sd22_2 707 733 - -
Stsc425g00006 1210 SMART LRR_sd22_2 103 129 - -
Stsc425g00006 1210 SMART LRR_sd22_2 224 257 - -
Stsc425g00006 1210 SMART LRR_sd22_2 321 342 - -
Stsc425g00006 1210 SMART LRR_sd22_2 442 468 - -
Stsc425g00006 1210 SUPERFAMILY RNI-like 84 408 - -
Stsc425g00006 1210 Pfam Leucine rich repeat N-terminal domain 36 75 IPR013210 -
Stsc425g00006 1210 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 539 855 - -
Stsc425g00006 1210 SUPERFAMILY Protein kinase-like (PK-like) 904 1205 IPR011009 -
Stsc425g00006 1210 Pfam Leucine Rich Repeat 783 803 IPR001611 GO:0005515
Stsc425g00006 1210 ProSiteProfiles Protein kinase domain profile. 929 1210 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc425g00006 1210 Pfam Leucine rich repeat 201 262 IPR001611 GO:0005515
Stsc425g00006 1210 Pfam Leucine rich repeat 685 744 IPR001611 GO:0005515
Stsc425g00006 1210 ProSitePatterns Tyrosine protein kinases specific active-site signature. 1056 1068 IPR008266 GO:0004672|GO:0006468
Stsc425g00006 1210 Gene3D Ribonuclease Inhibitor 33 197 IPR032675 -
Stsc425g00006 1210 Gene3D Ribonuclease Inhibitor 198 389 IPR032675 -
Stsc425g00006 1210 Gene3D Ribonuclease Inhibitor 511 854 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc425g00006 Stsc-Chr425 18079 22486 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc425g00006 1 653 Receptor kinase-like Gene Family AT4G08850 30.236 6.18e-80 282
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Stsc425g00006 Pkinase 1.8e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc425g00006 - - gmx:100786462 1526.53