Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc4249g00001 TTGGCATGGGAAACTTTGTATAGAGGAACCCCTGTTCATTTTGAGAGACCTGTAGTTGTGAAGGCGTTGAATCTTCAAACATGTGGGGCATCAAAGAGTTTCGTGGCCGAATGCAAAGCTCGAGGAAAAATCAAGCACAGAAACCTTCTCAGCATACTGACTTGTTGTTCAAGTGTTGATTACAAAGGGAATAATTTCAAGGCCATAGTGTTCGAGTTCATGTCTAATAGGAGTCTAGAAACCTTGCTGCACAACAACGCTGAAGATAGCGAGTCCATAAATATGAGTCTCAACCTTATACAAAGGGTAAATATTGCTCTTGATGTAGCTTTCGCATTGGATTATCTTCACAATGATTCATGGGAAGCTGTAGTTCATTGTGATATTAAGCCAAACAATGTTCTACTTGATGATGACATGGTTGCCCACTTGGGGGACTTTGGATTAGCTAGACTCATTCATGATGCAACAAGCCATTCTAGTAGTAATCAAGCAAGCTCCTCTACAATTAAAGGAACCATTGGATATATTCTACCAGAGTATGGAGCAGGCGGCTCAGCGTCAATAGTGGGAGACATGTATAGCTATGGAATTCTTCTTCTAGAGATGATCACTGGTAAGAAGCCAACTGATAGTATGTATTAG 645 0.4078 LAWETLYRGTPVHFERPVVVKALNLQTCGASKSFVAECKARGKIKHRNLLSILTCCSSVDYKGNNFKAIVFEFMSNRSLETLLHNNAEDSESINMSLNLIQRVNIALDVAFALDYLHNDSWEAVVHCDIKPNNVLLDDDMVAHLGDFGLARLIHDATSHSSSNQASSSTIKGTIGYILPEYGAGGSASIVGDMYSYGILLLEMITGKKPTDSMY 214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc4249g00001 214 ProSiteProfiles Protein kinase domain profile. 1 214 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc4249g00001 214 SMART serkin_6 3 214 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc4249g00001 214 Pfam Protein kinase domain 10 211 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc4249g00001 214 ProSitePatterns Serine/Threonine protein kinases active-site signature. 124 136 IPR008271 GO:0004672|GO:0006468
Stsc4249g00001 214 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 74 214 - -
Stsc4249g00001 214 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 7 211 - -
Stsc4249g00001 214 SUPERFAMILY Protein kinase-like (PK-like) 5 212 IPR011009 -
Stsc4249g00001 214 Gene3D Transferase(Phosphotransferase) domain 1 5 214 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc4249g00001 Stsc-Chr4249 330 1067 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc4249g00001 2 214 Receptor kinase-like Gene Family AT3G47570 51.852 6.37e-72 233
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Stsc4249g00001 Pkinase 2.4e-30 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc4249g00001 - - ahf:112766919 340.117