Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc423g00004 ATGGCGACGTACTTTCATGGCAATTCAGAAATCCAACCACCTTCTTCTGCTGATGGACTTCAAACACTTGTTCTCATGAATCCTCCTCCTCCTGCTGCCTACATCCACTACCCTGACGCGCCACCACCATCTCACGCTCCCACCAACCTTCTCTTTCTCAACTCTTCCGCCGGCGGCGGGAACAACTCCTTCTCACCTCACGCGCCTCCCCCTCACACACAACAGTTCGTTGGTATCCCCCTCTCCGCCGCCTCCTCCTCGCAGGACATCAGCCACCACCACGACGTCTCCGCCCTGCATGGCTTCTTCCCTCGCATGCAGTACAACCCCTGGACCACCATGGACCCCACCACGGCGGCGCGTGACACTCCACGCGCCCAGCAAGGTCTGTCCCTGAGCCTGTCCTCCCAGCAAGCCGGGTTTGGTTCTTTCAGGGTCGACCGTGACGTGCCGCAGGGCCAGGCGCAGGCTATGTCCGGCGACGAGCTTCGCGGTGGTGGTGGGTCAACGTCTTCAGCTTCGGGGGTGACGAACGGGGGTTCCAGCATTCAGAGCGTGCTTTTGAGCTCAAAGTATCTGAAGGCAGCGCATGAGCTTCTAGAGGAGGTTGTGAATGTTAACAACAATGGTGTTAACTCTGAGTTGTTGGCGACCAAAAAGAATGGCGGACAGAGCATCAAGACAGTTGGAGAGTCATCCACGGCAGCCAGCGGAGACGGTTCCATTGTTGGGGAAGCCAGCGGGAAGCCTAGCTCAGAGCTCTCCACCGCAGAGAGACAAGAAATTCAGATGAAGAAAGCAAAGCTACTCACCATGCTTGAGGAGGTGGAGCAAAGGTACAGACAGTACCACCACCAGATGGAGATAGTGGTGTCGTCGTTCGAGCAAGCGGCCGGAATAGGGTCGGCAAGGACTTACACGGCTCTTGCATTGCAAACGATTTCTAAGCAGTTTAGGTGCTTGAAGGATGCCATTACAAGGCAGATCAAGGCTTCAAACAAGAGCTTAGGAGAGGAAGATAATGGTTTTGGAGGCAAAATGGAAGGAGGGTCACGCCTTAAATATGTTGACCATCACTTACGGCAACAGAGAGCTCTCCAACAATTGGGAATGATCCAGCACAATGCTTGGAGACCCCAGAGAGGCTTGCCTGAACGTTCTGTTTCTGTTCTTCGTGCTTGGCTCTTTGAACACTTCCTCCACCCCTATCCTAAGGATTCTGACAAGCACATGCTTGCAAAACAAACAGGCCTTACTAGGAGCCAGGTTTCAAACTGGTTTATAAATGCACGAGTTCGACTATGGAAGCCAATGGTGGAAGAAATGTATGCAGAGGAGATGAAGGATCACGAGCTCAACAACATTGGTACTAGTACTAATTCTGAGGACAAATCAACCAAGAGCAACAACGAAGATCCTTCAACAAATATTGCAGCACCACTACAAGACAAGGTTCCAACATCTGAAACACAATCTGATAAACAGGACCATAGCAACACTCCAATGGTGTCATCAGTTGAAGGGAACATGAGAAACCAAGCAGGGTTCAGCTTTATCATGGGATCATCAGAACTAGAAGGAATCACTCAACAGCAACAGGGAAATAGTCCCAAGAAACCAAGAATCAACAACAATGAAACAATGCATAATTCCCAAAGTAACATTCCTTCAATGAACATGATGGATGTGAAGCCCAACGAGCAGGGGAGGCAAGGTTACTCTTTCATGGGGAACCAAACTAACTTCATTAGTGGTTTTGGACAGTACCCTACAATTGGGGACATTGGTAGGTTTGATCCAGAACAATTCACAACACCACCAACAACAAGATTTTCAGGGAATGGAGTTTCCCTCACTCTTGGTCTTGATTCATTGCCTGGAACACACCACCAAACTTTTCTACCAAACCAGAACATTCAACTCGGAAGAAGCATTGATATCGGGGAACCAAACGATTTCGTTGGTGCCATGAACACTTCTTCATCTCCTCACTCCTCTGCTGCTGCTGCTGCATTTGAGGGCATTGGCATGCAGAATCCAAAGAGGTTTGCTGCACAATTGTTGCCAGACTTTGTGGCCTAA 2082 0.5 MATYFHGNSEIQPPSSADGLQTLVLMNPPPPAAYIHYPDAPPPSHAPTNLLFLNSSAGGGNNSFSPHAPPPHTQQFVGIPLSAASSSQDISHHHDVSALHGFFPRMQYNPWTTMDPTTAARDTPRAQQGLSLSLSSQQAGFGSFRVDRDVPQGQAQAMSGDELRGGGGSTSSASGVTNGGSSIQSVLLSSKYLKAAHELLEEVVNVNNNGVNSELLATKKNGGQSIKTVGESSTAASGDGSIVGEASGKPSSELSTAERQEIQMKKAKLLTMLEEVEQRYRQYHHQMEIVVSSFEQAAGIGSARTYTALALQTISKQFRCLKDAITRQIKASNKSLGEEDNGFGGKMEGGSRLKYVDHHLRQQRALQQLGMIQHNAWRPQRGLPERSVSVLRAWLFEHFLHPYPKDSDKHMLAKQTGLTRSQVSNWFINARVRLWKPMVEEMYAEEMKDHELNNIGTSTNSEDKSTKSNNEDPSTNIAAPLQDKVPTSETQSDKQDHSNTPMVSSVEGNMRNQAGFSFIMGSSELEGITQQQQGNSPKKPRINNNETMHNSQSNIPSMNMMDVKPNEQGRQGYSFMGNQTNFISGFGQYPTIGDIGRFDPEQFTTPPTTRFSGNGVSLTLGLDSLPGTHHQTFLPNQNIQLGRSIDIGEPNDFVGAMNTSSSPHSSAAAAAFEGIGMQNPKRFAAQLLPDFVA 693
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc423g00004 693 Gene3D - 373 451 - -
Stsc423g00004 693 SUPERFAMILY Homeodomain-like 378 444 IPR009057 -
Stsc423g00004 693 MobiDBLite consensus disorder prediction 227 256 - -
Stsc423g00004 693 MobiDBLite consensus disorder prediction 528 559 - -
Stsc423g00004 693 ProSiteProfiles 'Homeobox' domain profile. 374 437 IPR001356 GO:0003677
Stsc423g00004 693 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 88 467 - -
Stsc423g00004 693 Coils Coil 259 286 - -
Stsc423g00004 693 Pfam Associated with HOX 186 326 IPR006563 -
Stsc423g00004 693 SMART prehox3 181 327 IPR006563 -
Stsc423g00004 693 CDD homeodomain 377 438 IPR001356 GO:0003677
Stsc423g00004 693 Pfam Homeobox KN domain 394 433 IPR008422 GO:0003677|GO:0006355
Stsc423g00004 693 MobiDBLite consensus disorder prediction 453 508 - -
Stsc423g00004 693 FunFam BEL1-like homeodomain protein 9 380 442 - -
Stsc423g00004 693 MobiDBLite consensus disorder prediction 450 508 - -
Stsc423g00004 693 SMART HOX_1 377 441 IPR001356 GO:0003677
Stsc423g00004 693 MobiDBLite consensus disorder prediction 165 180 - -
Stsc423g00004 693 MobiDBLite consensus disorder prediction 156 180 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc423g00004 Stsc-Chr423 36357 40535 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc423g00004 1 693 Homeobox Transcription Factor Family AT2G35940 48.276 8.64e-173 508
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Stsc423g00004 POX 2.8e-48 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc423g00004 - - aip:107622581 1050.04