Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc421g00005 ATGCTCCTCTCTTTACACCTCCCTTCACCGTCCCCTCCTTCTTCTTCTTCTTCTTACACTCCTTCTAGAACCTTCCACAACCAGCCCCACTACATCAAGTTCCGTACATCTTACCGCCAAAATCTCCGTTACCTCCAACACCTTACCGTTATCCCGCCCGACGCCCTTCCTGACTCAGACACCATTCACCGCATCTTCGCCACCATCAACCTCCTCAAATCTCACTCCCTCTCTGACTCCGATATCCCCCGCATCGCCGCCTCTGCCCCCTCCCTCTTCTCCCCCTCCTCCGCCGCCTACTCCCCCGATAACATCTCCGCCGTGTTCCACTTCCTCGCCGCCGACGTATCCGCCTCCTCCTCCGAGTCCCGCGGCCTCGTCCTCCGCTGTCCTCACCTCCTCCTCTCCCCGCACCCCGACCTCTGCCTCCGCCCAACGCTCCATTTCCTCCGCGACGAGATCGGGCTAACCGGTCTGAACCGGCCGACGAACCGGAACGCGCATCTGCTGAACACGCGCGTGGAGGATCTGCGCGTGAGGGTGGAGTTCTTGACGGAGGAGGTTGGGTTTGAGTACGAGGAGGCGATTAGGGCGTTAGGACGGTTACCGGCGATATTCGGTTACGGTTTGGAGAGTAATTTGAGGCCGAAATTTGAGTATTTGGTTGGTGAGATGGGTAGGGATGTTGAAGAGCTTAAAAAGTTTCCACAGTTCTTTGGGTTTAGCTTGCATAAGAGAATTGTGCCAAGGCACTTGCATTTGAAGCAAAGGGGTGTTGTTGATGTTCCCTTGAATAAGATGCTTATGTGGCGTGATGATAGATTCTATGCAAAATGGAAATGA 843 0.5504 MLLSLHLPSPSPPSSSSSYTPSRTFHNQPHYIKFRTSYRQNLRYLQHLTVIPPDALPDSDTIHRIFATINLLKSHSLSDSDIPRIAASAPSLFSPSSAAYSPDNISAVFHFLAADVSASSSESRGLVLRCPHLLLSPHPDLCLRPTLHFLRDEIGLTGLNRPTNRNAHLLNTRVEDLRVRVEFLTEEVGFEYEEAIRALGRLPAIFGYGLESNLRPKFEYLVGEMGRDVEELKKFPQFFGFSLHKRIVPRHLHLKQRGVVDVPLNKMLMWRDDRFYAKWK 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc421g00005 280 SMART mt_12 160 191 IPR003690 GO:0003690|GO:0006355
Stsc421g00005 280 SMART mt_12 124 157 IPR003690 GO:0003690|GO:0006355
Stsc421g00005 280 SMART mt_12 196 228 IPR003690 GO:0003690|GO:0006355
Stsc421g00005 280 SMART mt_12 229 260 IPR003690 GO:0003690|GO:0006355
Stsc421g00005 280 PANTHER CGI-12 PROTEIN-RELATED 176 278 IPR003690 GO:0003690|GO:0006355
Stsc421g00005 280 Gene3D Transcription termination factor 3, mitochondrial 36 280 IPR038538 -
Stsc421g00005 280 Pfam mTERF 103 275 IPR003690 GO:0003690|GO:0006355
Stsc421g00005 280 Coils Coil 167 187 - -
Stsc421g00005 280 MobiDBLite consensus disorder prediction 8 24 - -
Stsc421g00005 280 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc421g00005 Stsc-Chr421 29468 30401 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Stsc421g00005 mTERF 2.1e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc421g00005 K15031 - gmx:100812333 308.145