Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc421g00003 ATGGAAGGAGGAGAGAGAGGTGGTGTTCATCACAATAATAATTATGAGCTTCATCAAGTTCCATTCACCAACAACATAACCACACCTTCACAAGCCATAATCCATGAAATGAGCTTTGTTCAGTTTGAAGAAAACCACCTCCTTGGCTTCTTGTCATCACCTAATTCTTCACAATCTCAATCTTCTCAACTCTCTCAATCCTTAAATGCTGCCGCCACCACAGCCGCAACGGCAACCGTCACAACTGAAAATTGGAGAAACAAGAAGCAGGATGGAAGCACGGATCCGAAGGCTGTGAATGATGAAAATTGCACTGGAAATTCTGGTGAAGGCAACAATATTACTTGGTGGAAGAGTAGTGCAGGCACAGAGAAGAACAAGGTGAAAATGAGAAGGAAGCTAAGAGAGCCAAGGTTTTGTTTCCAAACAAGAAGTGATGTGGATGTTCTTGATGATGGTTACAAATGGAGGAAATATGGCCAAAAAGTTGTCAAGAATAGCCTTCATCCAAGGAGTTATTACAGGTGCACACATAGCAACTGCAGGGTGAAGAAGAGGGTTGAAAGACTCTCAGAAGATTGTAGAATGGTGATAACAACATATGAAGGTAGACACAATCACTCCCCTTCCGATGACTCCAATTCTTCAGACCAAGAATGCTTCACTTCTTTTTAA 675 0.4193 MEGGERGGVHHNNNYELHQVPFTNNITTPSQAIIHEMSFVQFEENHLLGFLSSPNSSQSQSSQLSQSLNAAATTAATATVTTENWRNKKQDGSTDPKAVNDENCTGNSGEGNNITWWKSSAGTEKNKVKMRRKLREPRFCFQTRSDVDVLDDGYKWRKYGQKVVKNSLHPRSYYRCTHSNCRVKKRVERLSEDCRMVITTYEGRHNHSPSDDSNSSDQECFTSF 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc421g00003 224 SUPERFAMILY WRKY DNA-binding domain 142 209 IPR036576 GO:0003700|GO:0006355|GO:0043565
Stsc421g00003 224 FunFam WRKY transcription factor 57 136 210 - -
Stsc421g00003 224 MobiDBLite consensus disorder prediction 77 107 - -
Stsc421g00003 224 ProSiteProfiles WRKY domain profile. 145 210 IPR003657 GO:0003700|GO:0006355|GO:0043565
Stsc421g00003 224 Pfam WRKY DNA -binding domain 151 207 IPR003657 GO:0003700|GO:0006355|GO:0043565
Stsc421g00003 224 MobiDBLite consensus disorder prediction 203 224 - -
Stsc421g00003 224 Gene3D WRKY domain 136 210 IPR036576 GO:0003700|GO:0006355|GO:0043565
Stsc421g00003 224 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 54 212 IPR044810 GO:0003700
Stsc421g00003 224 SMART WRKY_cls 150 209 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc421g00003 Stsc-Chr421 15973 19407 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc421g00003 1 224 WRKY Transcription Factor Family AT2G44745 57.826 4.53e-75 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Stsc421g00003 WRKY 1.4e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc421g00003 - - gmx:100788263 291.582