Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc41g00032 ATGATTCGCAGAAGTTTTGTAAGAGAACACTGGGAAGGAATAACAAGCCCGGCATTACTTGTTCTTCCTAATGGTACTGAATGGAAGATGGAATGGGAAAAACGTGGTGCTGATGTTTGGTTTGTCAAAGATTGGAAGAAATTTGCAGGGTTTTATTCTTTGGAAAAGCAGCAGGTTTTGATGTTCAAGTATGAAGGGAAGTCCCGGTTCAATGTTATAATTCTCAGTCCGAGTGGCTTGGAAAGAGAGTACCCTTTGTTGAACGAAACTCTAGAAGCTGAAGACGATTCGCGCAATTGTAAAAGGCCGAACTCTCCGTGGCGATGTTCTCCAAAGAAGAGAAGAACCAACACAAAAGAAGAAGCTAGATTATATTCTAGCCAGCATGGTGAAATCAAAGGTGCTCAATCTCGGTGGCCAAACACCGAGAAGAAGAAATTCAGTGCATATTCTGATAATGCAAGGCCAAGAGACAGAGATGGAAGGAGAATCTTCTCAAAATCTGAGGCTTCTAACAATGTGGAGGCACCAAAAGATACTAAAAGTAGCAGTGCTTTGGAGAGAGCCATGGCTTTCACTTCTAACAATCTTTGGTTCTTTCGCGAAATGAAACCAGCGTACCTCGATAAGTATCTTCTGTTCAAGAAAGGAGACTATATAAAGCAAGAAGGGAAAGAGGAGAATTTTCTCAGACTCTGGGTTACTGATGAGAATAAAACCTGGGATGCTAAGATCACAAAGAATGGTAATAATGGACAGATAATGATTACTACTGGTTGGAAGAACTTTGTAGAGGCCAACAACCTGAAACTAAATGATGTTTGCATTTTTGAGAAAACTGCAAATTCCAGAGGACTTTTATATAGAATTATTATCCACCGTGCCAAAGAAGAATCAACCGATATTCCATCTCAAGCTGCTGTTTCAGGTTACAAACAACGTGGACGCAGCAGCAATTGGACCGGAGATAATCAATTCACCATCAAATTAACGGAAACTCAGCTGAACAGTTGTGCGCACATACCTTATGGCTTCGTCAAAAAATATATACCAAAGGCAAAAGTTTTGACACTGCAGATTGGGAATAGAACTTGGGAGATGAAGCTAGACTATTATCAACAGCATAAATTTGCCAGATTATCTACTGGATGGCTCAAATTTGTCAGGGAGAATAATCTTAGTAAAGAAGATGAATGCACCTTTCAGCTGATAGATAGGGTAAAATATGTGATTGATGTTAGAGTATCAAAATGCATCAACTGA 1263 0.3975 MIRRSFVREHWEGITSPALLVLPNGTEWKMEWEKRGADVWFVKDWKKFAGFYSLEKQQVLMFKYEGKSRFNVIILSPSGLEREYPLLNETLEAEDDSRNCKRPNSPWRCSPKKRRTNTKEEARLYSSQHGEIKGAQSRWPNTEKKKFSAYSDNARPRDRDGRRIFSKSEASNNVEAPKDTKSSSALERAMAFTSNNLWFFREMKPAYLDKYLLFKKGDYIKQEGKEENFLRLWVTDENKTWDAKITKNGNNGQIMITTGWKNFVEANNLKLNDVCIFEKTANSRGLLYRIIIHRAKEESTDIPSQAAVSGYKQRGRSSNWTGDNQFTIKLTETQLNSCAHIPYGFVKKYIPKAKVLTLQIGNRTWEMKLDYYQQHKFARLSTGWLKFVRENNLSKEDECTFQLIDRVKYVIDVRVSKCIN 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc41g00032 420 ProSiteProfiles B3 DNA-binding domain profile. 237 296 IPR003340 GO:0003677
Stsc41g00032 420 MobiDBLite consensus disorder prediction 167 184 - -
Stsc41g00032 420 CDD B3_DNA 199 294 IPR003340 GO:0003677
Stsc41g00032 420 Gene3D - 312 419 IPR015300 -
Stsc41g00032 420 Gene3D - 178 298 IPR015300 -
Stsc41g00032 420 ProSiteProfiles B3 DNA-binding domain profile. 324 417 IPR003340 GO:0003677
Stsc41g00032 420 MobiDBLite consensus disorder prediction 148 166 - -
Stsc41g00032 420 SUPERFAMILY DNA-binding pseudobarrel domain 194 293 IPR015300 -
Stsc41g00032 420 Gene3D - 1 79 IPR015300 -
Stsc41g00032 420 ProSiteProfiles B3 DNA-binding domain profile. 1 78 IPR003340 GO:0003677
Stsc41g00032 420 MobiDBLite consensus disorder prediction 96 120 - -
Stsc41g00032 420 PANTHER B3 DOMAIN-CONTAINING 334 406 - -
Stsc41g00032 420 Pfam B3 DNA binding domain 333 407 IPR003340 GO:0003677
Stsc41g00032 420 Pfam B3 DNA binding domain 234 286 IPR003340 GO:0003677
Stsc41g00032 420 CDD B3_DNA 326 406 IPR003340 GO:0003677
Stsc41g00032 420 SMART B3_2 326 416 IPR003340 GO:0003677
Stsc41g00032 420 SMART B3_2 1 78 IPR003340 GO:0003677
Stsc41g00032 420 SMART B3_2 199 296 IPR003340 GO:0003677
Stsc41g00032 420 SUPERFAMILY DNA-binding pseudobarrel domain 2 78 IPR015300 -
Stsc41g00032 420 MobiDBLite consensus disorder prediction 143 184 - -
Stsc41g00032 420 CDD B3_DNA 4 76 IPR003340 GO:0003677
Stsc41g00032 420 SUPERFAMILY DNA-binding pseudobarrel domain 325 417 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc41g00032 Stsc-Chr41 178648 180303 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc41g00032 340 413 B3 DNA Binding Superfamily AT3G18990 30.667 2.62e-06 47.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Stsc41g00032 B3 5.9e-11 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc41g00032 - - ahf:112712192 541.576