Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc41g00030 ATGGCAGAAGGCACGCATCATTTGTGCAAGCATCGGGCTAATCAAATCAAATCAAATAATGATGACACTTGGAGTAGGAAGCACTACTACCAAGGGAATGCTGTCATGCCTATTCGCTTCTTCAAGATCATACTCAAAACCAACCTTAAAAGGCTTAAATTACCCAACAAGATTGCAAGGAAATATGGAGGTGGTTTGTCCAACCCAGTGTTCTTAAAGCCTCCGGATGGAACACGGTGGAAGGTGTGTTTGACTAAAAAGAATCATCAAGTTTGGTTTGAAAAGGGTTGGAAAGAATTTACTCAACACTACTCTCTGGATCATGGATGCCTTGTTCTCTTTAAATATGAAGGAACTACTTCTCCTCCTTCTTCTTCCCATTTTGATGTCATTATCATTGACAACTCTGATTTAGAAATAGACTATCCTTCCAACAATGGAAAAGACAATAGTGATGATGATGATTCAGTTCAGATTCTGAAGGAAACCAAGAATGTCTGTGCTTCTTCTCTGTCATTGAATTGGCCAAAGCAAGCAAGAGCACGAGAAGTAGCTAAGAAATTCGTATCACACAACCCTTTTTTCACGGTGCTCATAAAGCCTTCTCATCTCACAGAATACATACTGGGGATACCGGGTTTGGAAGGTTATGTGGGGGAAGAGGTGAAGATTGTGAAGCTTGAGAATGGGGATAGATGGTGGGCTGTGAAGATGCTTCGTCGTAACAAAGGCTATTCAAGTCGATGCCTTTCTGCTGGGTGGAACTTGTTTGCAAGTGAGACTGAGTTGAAGCCTGGAGATGTTTGTGTCTTTGAACTTGTTAATATGCAAGATTTGGTGTTCAAGGTTCATGTTTTTGCAAGCCAAGCTTAA 873 0.4112 MAEGTHHLCKHRANQIKSNNDDTWSRKHYYQGNAVMPIRFFKIILKTNLKRLKLPNKIARKYGGGLSNPVFLKPPDGTRWKVCLTKKNHQVWFEKGWKEFTQHYSLDHGCLVLFKYEGTTSPPSSSHFDVIIIDNSDLEIDYPSNNGKDNSDDDDSVQILKETKNVCASSLSLNWPKQARAREVAKKFVSHNPFFTVLIKPSHLTEYILGIPGLEGYVGEEVKIVKLENGDRWWAVKMLRRNKGYSSRCLSAGWNLFASETELKPGDVCVFELVNMQDLVFKVHVFASQA 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc41g00030 290 Gene3D - 175 289 IPR015300 -
Stsc41g00030 290 SUPERFAMILY DNA-binding pseudobarrel domain 39 136 IPR015300 -
Stsc41g00030 290 CDD B3_DNA 194 286 IPR003340 GO:0003677
Stsc41g00030 290 Gene3D - 11 137 IPR015300 -
Stsc41g00030 290 ProSiteProfiles B3 DNA-binding domain profile. 194 289 IPR003340 GO:0003677
Stsc41g00030 290 Pfam B3 DNA binding domain 47 119 IPR003340 GO:0003677
Stsc41g00030 290 Pfam B3 DNA binding domain 194 287 IPR003340 GO:0003677
Stsc41g00030 290 ProSiteProfiles B3 DNA-binding domain profile. 37 136 IPR003340 GO:0003677
Stsc41g00030 290 PANTHER B3 DOMAIN-CONTAINING 38 283 - -
Stsc41g00030 290 SMART B3_2 40 131 IPR003340 GO:0003677
Stsc41g00030 290 SMART B3_2 194 289 IPR003340 GO:0003677
Stsc41g00030 290 CDD B3_DNA 39 134 IPR003340 GO:0003677
Stsc41g00030 290 SUPERFAMILY DNA-binding pseudobarrel domain 190 287 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc41g00030 Stsc-Chr41 170755 172046 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc41g00030 153 286 B3 DNA Binding Superfamily AT3G18990 33.333 4.25e-14 70.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Stsc41g00030 B3 2.5e-09 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc41g00030 - - adu:107467238 355.14