Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc41g00029 ATGTCTTCTTCTCATCACTGGCGTGGCAAGGCTATCATCCCTGTCCATTTCTCTGCCATTATATTCAAGAAGACTCATCTTCACTCTCTGAAAATATCAAGTAAATTTACAAGGAGATATGGAGGTGGTTTGTCGAATCCAATGTTTCTGAAGCCTCCAGATGGCAGCATATGGAAAGTGTATTGGACTAGAAAAAATGATGATGGTGGTGGTGATGAGGTTTATTGGTTCCAAAAGGGTTGGAACAAGTTTACTGAAAAGTACTCCTTAGATCATGGCAACTTGCTGGTTTTCACATACCATGGAACTTCCCAACTTGATGTACACATCTTTGACAAAAGTGCCTCTGAGATACTCTATCCTTTATGTGATAAGGCTAACAATAACACTACTACTGCTGCTACTACTGGTTCTGATGAAAAGAACATCAAACTTGAACTGATCCATAATGATGATGGTGATGGCGATGATGAATCAGTTGAAGTTTTGAAGAAAAACCCTCCACCCCAGAAGCCTAATAATAAACACAAACGCAGCATGCTAGTGTTGGCTCCTCAACCTTGTAATAAAAGAATGAGAGATGAGAAGAAGAAGGTTGCTATGACTGAAAGAAGAAGTGCATGTGCATCATTGAATTGGCCAAAGGAAGAAAGAGCACAAGAAGTAGCTATGAACTTCGTGTCTCAAAATCCTTTCTTCACACTCTTCATAACACATGTCCATCTAGCAGTATACAAAGTGGTAGGATTAAATTAA 756 0.3929 MSSSHHWRGKAIIPVHFSAIIFKKTHLHSLKISSKFTRRYGGGLSNPMFLKPPDGSIWKVYWTRKNDDGGGDEVYWFQKGWNKFTEKYSLDHGNLLVFTYHGTSQLDVHIFDKSASEILYPLCDKANNNTTTAATTGSDEKNIKLELIHNDDGDGDDESVEVLKKNPPPQKPNNKHKRSMLVLAPQPCNKRMRDEKKKVAMTERRSACASLNWPKEERAQEVAMNFVSQNPFFTLFITHVHLAVYKVVGLN 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc41g00029 251 SMART B3_2 22 114 IPR003340 GO:0003677
Stsc41g00029 251 PANTHER B3 DOMAIN-CONTAINING 16 198 - -
Stsc41g00029 251 SUPERFAMILY DNA-binding pseudobarrel domain 19 114 IPR015300 -
Stsc41g00029 251 Pfam B3 DNA binding domain 26 113 IPR003340 GO:0003677
Stsc41g00029 251 CDD B3_DNA 21 112 IPR003340 GO:0003677
Stsc41g00029 251 Gene3D - 14 116 IPR015300 -
Stsc41g00029 251 ProSiteProfiles B3 DNA-binding domain profile. 15 114 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc41g00029 Stsc-Chr41 166641 167593 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc41g00029 17 242 B3 DNA Binding Superfamily AT3G18990 28.090 4.66e-16 74.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Stsc41g00029 B3 1.9e-11 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc41g00029 - - adu:107467240 349.362