Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc41g00027 ATGTCAAGTTGTGGTAGAGAAGGAGCAGTGAGGCAGTACATAAGATCCAAGGTGCCTCGCTTGAGATGGACTCCTGAGCTTCATAGATGCTTTGTTCATGCCATTGATAGCCTTGGAGGTCATCACAAGGCTACCCCTAAGCTTGTTCTTCAGTTGATGGACGTTAAAGGCCTAACAATTTCACACGTCAAGAGCCATCTTCAGATGTACAGAAGCATGAGGGGTGACTTGGGAAGACAAGGTAGGATATCAAACCAGCATAGGAACCAATCTTTTGAGGAGCATGATGATGGGTGTGTTGATGAAGTGAATGATGTTCATCATCATCATCATCATCAAAACTATCATCCATCTTCAAAACCCGTTGGAAAAGAAGAATCCGATTCTCTCTTCGGATACAGTAACTTCCCCTCAAAAAGGGCTAGAATAGAGAGAAACTGTTCCATTTCGGAGAAGCTGCAATGCAGACAAGAGAGAACAGTGCCGTATCCGTACTCCTTTTATGATTATGCTTATTCAACACACCATCAACAACAACAACAACCACCTCATTCCACAGTTTTCCCTATGCTGCCACCACTTCTTGGAAATTTCCTTCAGGTTACTAAATTAAATGATAGAGAGACCACCACATCGGAGGCAATGACTGAAAATAATGATGTACTTTTGAAGAAGACGAGGAGTGAGAAGAAGGCACGTGCAGAAGAAGAGGAAGATGGAGATGTTGGAAGAGTTTGTGAATTGTCATTGTCTCTCACATTGCCAAATCCTTCAACACCCCAGAGAAGTAGTAATGTTTCTACTTCAGCCTCAGCCAGTGAGATCACTGAAGCTGCTATCTCTTCATCATGTTCCACTACTCTCAAAGATAGCAGGATTAATCTTGACTTGTCTCTAGCCCTTTAA 906 0.4272 MSSCGREGAVRQYIRSKVPRLRWTPELHRCFVHAIDSLGGHHKATPKLVLQLMDVKGLTISHVKSHLQMYRSMRGDLGRQGRISNQHRNQSFEEHDDGCVDEVNDVHHHHHHQNYHPSSKPVGKEESDSLFGYSNFPSKRARIERNCSISEKLQCRQERTVPYPYSFYDYAYSTHHQQQQQPPHSTVFPMLPPLLGNFLQVTKLNDRETTTSEAMTENNDVLLKKTRSEKKARAEEEEDGDVGRVCELSLSLTLPNPSTPQRSSNVSTSASASEITEAAISSSCSTTLKDSRINLDLSLAL 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc41g00027 301 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 5 123 IPR046955 GO:0003700
Stsc41g00027 301 MobiDBLite consensus disorder prediction 108 131 - -
Stsc41g00027 301 FunFam Myb family transcription factor 17 75 - -
Stsc41g00027 301 MobiDBLite consensus disorder prediction 252 272 - -
Stsc41g00027 301 SUPERFAMILY Homeodomain-like 17 72 IPR009057 -
Stsc41g00027 301 Pfam Myb-like DNA-binding domain 21 71 IPR001005 -
Stsc41g00027 301 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 15 75 IPR017930 -
Stsc41g00027 301 NCBIfam myb-like DNA-binding domain, SHAQKYF class 19 72 IPR006447 GO:0003677
Stsc41g00027 301 Gene3D - 18 74 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc41g00027 Stsc-Chr41 142965 146563 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc41g00027 1 74 G2-like Transcription Factor Family AT1G14600 73.418 1.26e-34 124
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Stsc41g00027 Myb_DNA-binding 1.2e-05 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc41g00027 - - gmx:100787188 287.345