Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc41g00019 ATGAAGTCATGCTCAAAGACTATTGTCCTTGTGGCTAGTGCAGGATATGGATTGGACCTTACTGTTGCAGTTGATATTTTTGAAACTGTGAGGTCCACAGATGGGTTAGCAGTTGCTATAGTTTTGAGGCCTTTTAGCTTTGAAGGGTTAAGACGACAGGATGAGGTGAAGGATTTGGTGGGGAAGCTTAAGGAGAGCACGGATTTAATTATAGAAATTGATATTGATTCACTGCTTCAAAAAGATTTGTTGACTCTAGATGAGGCCATGAAGACTGCAAACAATGCAGTTTTGTTGGCTATTAAGGCCATATATGTATTAAAATCTGAGATGCATAGAAAACTTATAGATAGATTGCATGATGGTGCGATAGAAGCCAGCACTTTAGAAGTTAATAAAGATCCAACTAGCATTGTTATATGCATTCTTGCTAGTTCAGTGCCCATTAATGATAGCGATATAGCAGCCTTTCTGCGTACATTCCGGCAAACTACAGCATATAAAGGGGACATTATAGCATCCACAATCTGTGAGCCAAATGTTGAGCCCAACTTATGGATAACAACTGTCCTTGCACTTGGCAGTTCAAAATTGAAACAATCTGTCCAGAGTGTTGGTATACTGTCCAGACTGGCCCTGCATTTTCCTCGTGTTTTTAGCTTTTGGGGGATGCATAACCAGCAACAAGTTCACGTGGGGAAAGAGTGTGCAACATCTTCTCAGAAAGTGGTGGAGTCTTATGAAATGAAGGAGGAGAATAGGAATGCTGCGCATTTTGTAGATGGCAGTTTTAATAATCATGATGAACAGTTGAAGCCAAGAGTGAACAGCAGCAGCTCAAAGTTGGCTACTTTGAGGTTTTCTGAAAAAGAAGATATGTTTGACTCTATAGCCCAGAATTCTCTCCCTGATGACTCTATTACTGAAGATGACTCTGCTTTTGAAAGGGAGCAACTTGAAAACTGGAATCTGGGTCCTGGATATGAGGTGGCAAGGGAGTGGGCCCAAGAAAGGGTAGCTGATGCGGCGCATATGATTGATAACCTAAGCATATTCCACCTTCCTGTAGGTGTGAGGCCTTCAGAAGATTTGAAAGATTGTTTAAAAGTCTCATTCATGACAGAACAGAAGGATCTGGAATTCAATGAAGTAAATCTATCAACAATAAATGAGGCCATGTCTTGGAATGCAGTGACTGATGCAAGTTTAGAAGCAGTAAAGGGATTGGCATCTTCACTTTTGAAGGGTAAAGATGCTACTAAACCAAAGAAACATGGAGTACTATCTAATAGAGCTGCTTCTATGCTGGAGGCTGAACGGGACTTGTCAAAAAAGTGGAATCCTGGGCGTCTTGTTCTTGGAGATGGAAGTATATATGATGGCTCATGGCGCCATGGTAAGAGATCAGGCTCAGGTACCTTCTATTTCAAAAACGGAGACATGTTTCAAGGATCATGGAGGGATGATGTCATGCACGGCAAGGGTTGGTTTTATTTTCACACTGGTGATCGGTGGTTTGCAAACTTTTGGAAGGGAAAAGCCAATGGTGAGGGGCGGTTCTACAGCAAGTCTGGTGATGCCTTCTTCGGGAATTTCAAAGATGGTTGGCGGCAAGGCCAATTTCTTTGCATCAATGCTAACGGAACGAGGTATATTGAGATTTGGGAACAAGGTGTTCTTTTAGACATCAAACAGTTAGATGACCAAGCACTATAA 1716 0.4178 MKSCSKTIVLVASAGYGLDLTVAVDIFETVRSTDGLAVAIVLRPFSFEGLRRQDEVKDLVGKLKESTDLIIEIDIDSLLQKDLLTLDEAMKTANNAVLLAIKAIYVLKSEMHRKLIDRLHDGAIEASTLEVNKDPTSIVICILASSVPINDSDIAAFLRTFRQTTAYKGDIIASTICEPNVEPNLWITTVLALGSSKLKQSVQSVGILSRLALHFPRVFSFWGMHNQQQVHVGKECATSSQKVVESYEMKEENRNAAHFVDGSFNNHDEQLKPRVNSSSSKLATLRFSEKEDMFDSIAQNSLPDDSITEDDSAFEREQLENWNLGPGYEVAREWAQERVADAAHMIDNLSIFHLPVGVRPSEDLKDCLKVSFMTEQKDLEFNEVNLSTINEAMSWNAVTDASLEAVKGLASSLLKGKDATKPKKHGVLSNRAASMLEAERDLSKKWNPGRLVLGDGSIYDGSWRHGKRSGSGTFYFKNGDMFQGSWRDDVMHGKGWFYFHTGDRWFANFWKGKANGEGRFYSKSGDAFFGNFKDGWRQGQFLCINANGTRYIEIWEQGVLLDIKQLDDQAL 571
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc41g00019 571 PANTHER RADIAL SPOKE HEAD 1 HOMOLOG 24 558 - -
Stsc41g00019 571 Gene3D Tubulin/FtsZ, GTPase domain 2 194 IPR036525 -
Stsc41g00019 571 Gene3D - 458 509 - -
Stsc41g00019 571 Gene3D - 510 565 - -
Stsc41g00019 571 Pfam MORN repeat 459 481 IPR003409 -
Stsc41g00019 571 Pfam MORN repeat 482 504 IPR003409 -
Stsc41g00019 571 Pfam MORN repeat 509 526 IPR003409 -
Stsc41g00019 571 SUPERFAMILY Tubulin nucleotide-binding domain-like 6 106 IPR036525 -
Stsc41g00019 571 SMART morn 526 547 IPR003409 -
Stsc41g00019 571 SMART morn 480 501 IPR003409 -
Stsc41g00019 571 SMART morn 457 478 IPR003409 -
Stsc41g00019 571 SUPERFAMILY Histone H3 K4-specific methyltransferase SET7/9 N-terminal domain 449 559 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc41g00019 Stsc-Chr41 76244 81991 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc41g00019 1 567 PP2C-type Phosphatase Gene Family AT1G75010 43.541 2.56e-152 453
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc41g00019 - - aip:107618192 901.738