Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc41g00017 ATGGCACAATCATCTTCATCAGCATCGCTCTTTGGATTTAGAGGAGAAGATCAGAACCAGATGAAGGAACAGCATTCCTTGCCTCCATCATCTTCAACCACCTCATCAGCTGCACCACCACAGCAGAAGAAAAAACGAAACCAACCTGGAACACCAAGCAAATCCAGATGCGGAGGTGATAGCACTATCTCCCAAGACCCTAATGGCAACAAACAGGTTTATATGGCTCTTGGTGACCTCACTGGCATCAAGAAGCACTACTCTCGCAAGCATGGCGAGAAGAAGTGGAAGTGCGACAAGTGTTCCAAGAAGTACGCTGTTCAGTCCGATTGGAAAGCCCATTCTAAGACCTGCGGCACTCGTGAATACAGATGTGATTGTGGCACTCTCTTCTCCAGGAGAGACAGTTTCATCACCCACAGAGCTTTCTGTGATGCATTGGCTCAAGAAAGTGCAAGGCAGCCACCAAACCTTGGAAGCCACCTTTATGGAAGCAGCAACAACACCATGGCTTTAGGCTTATCTCAGGTGGCTATGGGTATGGGTGTTGGTGTTGGTGTGGGCCCACAACAGTTACCAAGCGGTCAATTAGACCACATGCTTCCACCACCGCCATCATCATCGTCCTTTAGATCTCCACCACCACCACCACACCCTTCATTCTTCATGAATGATCATCAAAACTTCCATGACCAACCGCAGTTGCATAGCAATAAACCATTCCATGGCCACCATCAGGGACTCATGCAACTATCTGATCTTAACAACAATAATAATAACAACAGCATGGATAATAATAATTCTCCATCAGGAGCAGGAGGAGGAGGAGCTAATAATAATAACAATAATAATAGTAACCACTTCAACCTTCCATTCCTTTCAAGTACCAGCACTAACAGCAGCAACAACTCTTTCTCTGATCAGCATGGTAATAACAATAATGAAGGGAACAACAATTTCTTCACCGGTGCAGGTGCAAGTGCTATACTGCACCAAACAACCTCATCAACTGCACCGTCACTCTTCAGCAATTCTCTTCAAACCAACAACAGTGGCTCCATCTCTCACATGTCCGCAACTGCACTCCTTCAGAAAGCGGCACAAATGGGTGCAACTACAAGCAACAGCACCGCCTCGCTTCTCAAGAGCTACGGCGCCACTTCCACAACCAGCGCCGCCGCCGCTGCGAAGCCTCACGATCATCAGAGGGCGGCGGCATCAATGGTGAACAACGCTGCTGCAGCAAACTATGGAAGCATATTCGGGTCAGGTAGCGAGCAGGGTAATCTCCAGGACCTGATGAACTCGTTTGCTAATGTAGCTGGCGGTGGAAACTCTTCTTCATTGTTCGAAACCGGAGGAGGCTCTTCTGTAGGGCTCATGGGTGGGTTCGATGCATACGATCATAGCTCAAATAGTAGGGACCCGAAGCTGCAGGGAGTGAGCATCGGTGGTGGCTCCGATGGCCTCACTAGGGACTTTCTCGGCGTTGGTCAAATAGTGAGAAGCATGAGCAGTGGCGGCGGCGGAGGAGGTGGAGGAATCTCTCAAATGAATAGTAACGCTGCGCCGTCAGGGCAATCTTTCGGCAGTGGCGGTGGCGGTAGCGGTGGAGGAGGGAATTTTCAGTGA 1632 0.4939 MAQSSSSASLFGFRGEDQNQMKEQHSLPPSSSTTSSAAPPQQKKKRNQPGTPSKSRCGGDSTISQDPNGNKQVYMALGDLTGIKKHYSRKHGEKKWKCDKCSKKYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAQESARQPPNLGSHLYGSSNNTMALGLSQVAMGMGVGVGVGPQQLPSGQLDHMLPPPPSSSSFRSPPPPPHPSFFMNDHQNFHDQPQLHSNKPFHGHHQGLMQLSDLNNNNNNNSMDNNNSPSGAGGGGANNNNNNNSNHFNLPFLSSTSTNSSNNSFSDQHGNNNNEGNNNFFTGAGASAILHQTTSSTAPSLFSNSLQTNNSGSISHMSATALLQKAAQMGATTSNSTASLLKSYGATSTTSAAAAAKPHDHQRAAASMVNNAAAANYGSIFGSGSEQGNLQDLMNSFANVAGGGNSSSLFETGGGSSVGLMGGFDAYDHSSNSRDPKLQGVSIGGGSDGLTRDFLGVGQIVRSMSSGGGGGGGGISQMNSNAAPSGQSFGSGGGGSGGGGNFQ 543
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc41g00017 543 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 76 509 IPR031140 -
Stsc41g00017 543 MobiDBLite consensus disorder prediction 188 320 - -
Stsc41g00017 543 MobiDBLite consensus disorder prediction 206 221 - -
Stsc41g00017 543 MobiDBLite consensus disorder prediction 249 320 - -
Stsc41g00017 543 Gene3D Classic Zinc Finger 72 144 - -
Stsc41g00017 543 FunFam protein indeterminate-domain 5, chloroplastic-like 74 153 - -
Stsc41g00017 543 MobiDBLite consensus disorder prediction 22 71 - -
Stsc41g00017 543 MobiDBLite consensus disorder prediction 506 543 - -
Stsc41g00017 543 MobiDBLite consensus disorder prediction 1 71 - -
Stsc41g00017 543 MobiDBLite consensus disorder prediction 510 534 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc41g00017 Stsc-Chr41 66953 71116 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc41g00017 39 160 IDZ Gene Family AT2G02070 69.672 3.09e-52 186
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Stsc41g00017 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc41g00017 K25870 - gmx:100786121 346.665