Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc417g00003 ATGGCAGAAATAGCAGTAAACCTTGTGGTTGACAAACTAATTCCATTGCTTGTAAGTGAAGCAAAGTTGCTGAGTGGAGTGCGTGGCCAAATCGAAAGCATCAGCGACGATCTTAAGCTGATGCGAGCATACCTGAGGGATTTGGATGCAAAGGCGGAGATGGAGGCAGAGAGCTCTCATCAGAACAGAAAGGAGTGGGTTAATCAGATGAGACAACTTTCCATTCACATTCAAGATGTCATTGACCTTTACTTGTACAAAGTGGCCACCAAAGATGATGACGATGATGACCAGAATCGCCGTCGTCGTCGTGGAAGGCGAAACGCCATCGTAGGGGTTTTGTGCCGAATCTGTGACCTGCTAAAAAGCTGTGTACCTCGGCATGAGATTGCATCTGAGATTGGGGAAATCAGAGAGTCAATAAATAGACTCACGAAGGCAGCACAACTATATGGCTACTCCAATGCTGCTGTTGCTGCACCTGAATCAAGCCGCGGTTGGGGTTCACAAGAACGGCATTACCTTCGACTACGAGCCAACTTTGCTGAGGAAGAAGAGCTTGTGGGGATTGAGCATGCCAAGAAGGAGATTAAGAACTGGCTCTCTCAAGGAGGTGGTGCTCGCACAGTCATTGCTGTCGTCGGCGAAGGCGGACTTGGTAAAACGACTCTGGTAAGGAATGTATACAATCAAGAAAAGCACTCTTTTGATCGTTGTGCTTGGGTTGATGTATCTCGCTCACTCAAAGGGGTCCAGTTGTTCAAGGCTTTGCTGCAGAACTTTCTTGATGATAAAAAATCAAGCAATCTGGACAAAAACCTCGATGATTTGATTAAAGATATAAGAGAACACTTGAATGAAAAGAAGTACTTGATAGTACTCGATGATGTGTGGGAGAAAGATCTTTGGGGAGCTGTGGAATTAGCATTGCCTGCTAATGCTAATGGAATGATAATCATCACAACAAGAGACAGTGGTGTTGCTGATTCTTGCAAAGAGTCAGCGAAAGTTCATACCTACCCCCTGAATCCTCTTGAACATGAAGATGCCTTGAGACTCTTCTACTCAAAGGCATTTCATTCTAACCCCCCTGAAGAGTTGATGAAGCTATCAGAAGAGTTCACCAAAAAGTGTGAAGGTGTGCCACTTGCAATTGTGGCTATAGCTTCTCTTTTATCAACCAAGAAAGAAACAGTCTCAGAATGGCAGCTGGTGTACAACAGCCTTCAATCAAAGCTTGCAAGCGATTCCCGCCTTAAAGCAATACGCAATCAAAAGATCTTAGTTGGAGAAGAGTACTTAGCGGAGCTCATTGCGAGGAGCTTGGTCAAGGTAGCTCAAGTGGACCCCTACGATGGCAGAGTTAAAGCATGTCGGGTTCATGACTTGATGCATGACTTCATTCTCAGGAAATGCGAAGAGTTCAACTTGTGTCAAGTGAAGAAAGGTACGCCATTTTGTTTTGATAAATGGACCAGACGCTTATCAATTGGCACTAATGTTGACTTTGCTTCTTTGAGAACAAGTGCTTCAAGTACAGAGTTCGATAAAAAACAATGTAGCTTGTTGCGTTCTTTCCTTCTTTACAATATTGAGGAGGAAACCATAACCCCTTTTGTGAATTCACTTTTCTCTAATTTAAAACTATTGGTGGCACTGGACTGTGAAAGAATACCACTTAATCATCTTCCGGAAGCCATTGGAAACTTTCTCCACTTGAAATACCTAAATTTAAGAGGTACTGACATCAAGATCATCCCCAAATCCATTGGCAAGCTTCAAAATCTAGAGACTCTTGACCTGAAAAGGACTAATGTGACTGATCTTCCGGTGGAGGTTTACTCGCTTACAAAGTTGTGCTATCTTAACGTGCGTACAAAGGAGTGGGAAGGTGTGAAATTAGAAAAAGGGATTGGAAATTTAACGAGCCTACAAAAATTAGCCACTGTTGATGCAAGGGTTGATGTTGTTGGAGAACTGAAGAAGCTGAAGCAGTTGAGGTCTTTGAAGATAACAAATCTTGTTAGAAAGGATGGAATATCATTGTGCAATGCTATAGAGAGCATGACCAATCTATGCTCATTGAAGATAAGAGCCAAACACAATGAAATTCTTGAGTTGGAGTCATTAAGGAGTCCTCCTCCACACCTTGAGTGTCTTTACTTATTTGTAGAAAGTTCTTCGCTGTTACAAAAGGTGCCAGATTGGGTTTTTAGACTCAAAAATCTTATCAAGTTGATGTCGAATGCGTTTAAATTAACACAATACCAATTGTCTCTTTTAGGGCACCACCTGCCAGAACTGATTGTACTTAGCGTCGGCGGGCCATTTGAGGGTGATGAATTAAACATCCAAAAGGGGTGGTTTGCGAAATTAAGATCACTGCACCTATGGGCTTCAGGATTGAGAACTATTAGCATAGATGAAGGATCACTGCCTTTTCTCCAAGAGTTCGTGGTAGAAAATTTGAATAGGATGAAACCAGAAGTCGTGGAAATACCAGATCGTGTACGGAAAGTGATGCCATTGTATTCATGCATGTAA 2544 0.4257 MAEIAVNLVVDKLIPLLVSEAKLLSGVRGQIESISDDLKLMRAYLRDLDAKAEMEAESSHQNRKEWVNQMRQLSIHIQDVIDLYLYKVATKDDDDDDQNRRRRRGRRNAIVGVLCRICDLLKSCVPRHEIASEIGEIRESINRLTKAAQLYGYSNAAVAAPESSRGWGSQERHYLRLRANFAEEEELVGIEHAKKEIKNWLSQGGGARTVIAVVGEGGLGKTTLVRNVYNQEKHSFDRCAWVDVSRSLKGVQLFKALLQNFLDDKKSSNLDKNLDDLIKDIREHLNEKKYLIVLDDVWEKDLWGAVELALPANANGMIIITTRDSGVADSCKESAKVHTYPLNPLEHEDALRLFYSKAFHSNPPEELMKLSEEFTKKCEGVPLAIVAIASLLSTKKETVSEWQLVYNSLQSKLASDSRLKAIRNQKILVGEEYLAELIARSLVKVAQVDPYDGRVKACRVHDLMHDFILRKCEEFNLCQVKKGTPFCFDKWTRRLSIGTNVDFASLRTSASSTEFDKKQCSLLRSFLLYNIEEETITPFVNSLFSNLKLLVALDCERIPLNHLPEAIGNFLHLKYLNLRGTDIKIIPKSIGKLQNLETLDLKRTNVTDLPVEVYSLTKLCYLNVRTKEWEGVKLEKGIGNLTSLQKLATVDARVDVVGELKKLKQLRSLKITNLVRKDGISLCNAIESMTNLCSLKIRAKHNEILELESLRSPPPHLECLYLFVESSSLLQKVPDWVFRLKNLIKLMSNAFKLTQYQLSLLGHHLPELIVLSVGGPFEGDELNIQKGWFAKLRSLHLWASGLRTISIDEGSLPFLQEFVVENLNRMKPEVVEIPDRVRKVMPLYSCM 847
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc417g00003 847 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 172 416 IPR027417 -
Stsc417g00003 847 Gene3D - 344 426 IPR042197 -
Stsc417g00003 847 Gene3D - 4 131 - -
Stsc417g00003 847 Coils Coil 267 287 - -
Stsc417g00003 847 Pfam Rx N-terminal domain 5 100 IPR041118 -
Stsc417g00003 847 CDD RX-CC_like 2 141 IPR038005 -
Stsc417g00003 847 PRINTS Disease resistance protein signature 591 607 - -
Stsc417g00003 847 PRINTS Disease resistance protein signature 210 225 - -
Stsc417g00003 847 PRINTS Disease resistance protein signature 378 392 - -
Stsc417g00003 847 PRINTS Disease resistance protein signature 284 298 - -
Stsc417g00003 847 Pfam NB-ARC domain 191 421 IPR002182 GO:0043531
Stsc417g00003 847 Gene3D - 171 339 IPR027417 -
Stsc417g00003 847 PANTHER DISEASE RESISTANCE PROTEIN RP 52 802 IPR044974 GO:0006952
Stsc417g00003 847 Gene3D Ribonuclease Inhibitor 489 843 IPR032675 -
Stsc417g00003 847 SUPERFAMILY L domain-like 459 823 - -
Stsc417g00003 847 FunFam Probable disease resistance protein At1g61300 170 336 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc417g00003 Stsc-Chr417 38624 43420 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc417g00003 186 396 WRKY Transcription Factor Family AT5G45050 27.189 1.85e-09 59.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc417g00003 K13457 - qsu:111987192 493.426