Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc417g00002 ATGGCAAGATCACAACAGAGATACCGAGGTGTGAGACAAAGGCATTGGGGTTCTTGGGTCTCTGAAATTCGCCATCCCATTTTGAAGACAAGGATATGGCTTGGAACATTCGAAACAGCAGAGGATGCTGCTAGAGCCTATGATGAAGCAGCTAGGCTTATGTGTGGTGCAAGAGCAAGAACTAATTTCCCTTTCAACCCTAACAACAACAATAATGTCTCTTCTCAATCATCTTCTTCTTCTTCTTCAAAGCTTCTCTCATCAACTTTGATTGCAAAATTGCACAGGTGCTACATGGCTTCTCTGCAATTAGCTAGACAACCTTCTTCACAACAAGACCCTCAAAGGGTAATGGTGCCCATTAATGATAATCATAATAATAGCACTAATAATAACTACTCCTCCAAAGTGATCAAAATTAGTGAAAAGGGTGATTCAATTGTGTCATCAAGAAAGAGAACACATGATGATGAGGAAGAGGTGGTGAAACAAGAATCAGAGGCCAATTGGGTTGTCAAGAAAGTTAAGGGTATGGACCAAATTGGTCCACAGTTCAAGCCACTTGAAGAAGATCACATTGATCAAATGATTGAGGAGCTTCTGCATTATGGCTCTATCGAACTTTGTTCTGTTATTCCACACCAACCTATTTAA 654 0.4037 MARSQQRYRGVRQRHWGSWVSEIRHPILKTRIWLGTFETAEDAARAYDEAARLMCGARARTNFPFNPNNNNNVSSQSSSSSSSKLLSSTLIAKLHRCYMASLQLARQPSSQQDPQRVMVPINDNHNNSTNNNYSSKVIKISEKGDSIVSSRKRTHDDEEEVVKQESEANWVVKKVKGMDQIGPQFKPLEEDHIDQMIEELLHYGSIELCSVIPHQPI 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc417g00002 217 Pfam AP2 domain 7 56 IPR001471 GO:0003700|GO:0006355
Stsc417g00002 217 Gene3D AP2/ERF domain 6 65 IPR036955 GO:0003700|GO:0006355
Stsc417g00002 217 ProSiteProfiles AP2/ERF domain profile. 7 64 IPR001471 GO:0003700|GO:0006355
Stsc417g00002 217 FunFam Ethylene-responsive transcription factor 2 6 66 - -
Stsc417g00002 217 CDD AP2 6 61 IPR001471 GO:0003700|GO:0006355
Stsc417g00002 217 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 4 174 - -
Stsc417g00002 217 SMART rav1_2 7 70 IPR001471 GO:0003700|GO:0006355
Stsc417g00002 217 SUPERFAMILY DNA-binding domain 7 65 IPR016177 GO:0003677
Stsc417g00002 217 PRINTS Ethylene responsive element binding protein signature 8 19 IPR001471 GO:0003700|GO:0006355
Stsc417g00002 217 PRINTS Ethylene responsive element binding protein signature 30 46 IPR001471 GO:0003700|GO:0006355
Stsc417g00002 217 MobiDBLite consensus disorder prediction 62 81 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc417g00002 Stsc-Chr417 31999 33180 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc417g00002 1 217 AP2-EREBP Transcription Factor Family AT5G25190 55.300 5.52e-73 218
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Stsc417g00002 AP2 7.5e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc417g00002 - - aip:107605402 291.197