Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc413g00002 ATGCCTCCGTCGCAGCCCCGCCGCCTTCCGCCCAAGGCCGCCTCTCTCGACCCTAAAATCTGGCGTGCATGTGCCGGTGCCGCCGTTCACATCCCCGCCGTGCATTCTAGGGTTTACTACTTTCCGGAGGGTCATCTCGAACAAGCCTTCCCACCATCCCTTCACAACAACCACCACCACCATCACCTGAACCCTCTCAGTCGCACACTCCCGTTCGTCCTTTGCCGCGTTTCTACTGTTCAATTCCTCGCCGATCCCCTCTCCGACGAGGTATTCGCTAAGCTCCTCCTAACTCCCATAGCCGCCGACGATCGTTCGTCCTCCACCGGCGAGGATCGACCTGCTGAGGAACCGGATTCCATTGGCGGGGACAAGGTGTCCTCGTTTGCAAAGATTCTAACACCGTCCGACGCCAATAACGGTGGCGGTTTCTCTGTTCCGAGGTTCTGCGCTGACTCCATTTTCCCGCCGCTCGACTACACCGCCGATCCGCCGGTACAGGTTCTCACCGTTACCGACGTTCACGGTGCCACCTGGGACTTCCGTCACATATACCGTGGGACTCCCCGGCGGCATCTCCTGACAACCGGTTGGAGCAAGTTCGTGAACCACAAGAAGCTCGTAGCCGGTGACTCCGTCGTGTTCATGAAAAGTTCCCAAGGCTCCTTGTTTGTCGGCATTCGGCGTACCTTGAGATTCTCTGTCGCGCTGGCTGAGAATCGAGACCCGTGGCTGGAGGAAGAGGATGAAGAGGAGAACAGCAATGATCCTCCGGTGTTTACTAGGGATGGAAAGGGGAAGGTGACGGTGAAGGCCGTGGCGGAGGCTGCGGAATTGGCGGCGAGGGCCATGCCGTTTGAGGTGGTTTATTATCCAAGGGCTGGGTGGTCAGATTTCGTTGTTAAGGCCGAGGCTGTAGAGGGAGCAATGAAGGCGGGTTGGTGTCCTGGAATGAGAGTGAAAATGGCTGTGGAGACTGAGGATTCTTCTAGAATGACTTGGTTTCAGGGGACTGTGTCTTCGGCCTCGGCTCCTGATAATGGGCCTTGGAGGGGTTCTCCTTGGCGCATGCTTCAGGTTACATGGGATGAACCTGAAGTCCTGCAGAATTCGAAGCGAATTAGTCCTTGGCAGGTGGAAATTATTTCAACCTCATCTTCACTCCATACGGTGTTTCCCCCCACAAAAAAGTTTAGAGCTGGGGCATTAAGTGATCTAGAAGGAGACCCTTACTTCCCTATAACAGGGTTCACTAACTCAACAATGGAACACCTGAGTCAAACATTGTTGGGTTATAATACTTTTCCTGCTGGCATGCAGGGAGCCAGGCATGATCTATTTTCTCCATCAAGTTTTTCCAACTTTTTGAATGGTAACTCTCATCTGCATATGGGTAGCAGTTTCTTTGGGAAGACTACAGAGCCTATGTTAAGTACTGTGTCAACAGAGCTAAACATTGGCAACTGCCAATCTGGCGACTTCTCACCAGATAGCCCAAGTAGTTTGCGTTCATTTGGCCCAGAGTTTACTGGGACCAACAACAGCAACGTCCCGAAAATTGGTTCTGGTTCATTTCTGCTGTTTGGTAAGATCATAAAACCTGTTGAAGTTGAGTTGCATGATGCTGGTTGCATTGCAGATGATGGCTGTAAGAGCAGCACTGAAACTGAATGCATTGACAAGCCAGTGGATCATTCTCNNNNNNNNNNCTCAGGCTTGATGTAG 1725 0.5223 MPPSQPRRLPPKAASLDPKIWRACAGAAVHIPAVHSRVYYFPEGHLEQAFPPSLHNNHHHHHLNPLSRTLPFVLCRVSTVQFLADPLSDEVFAKLLLTPIAADDRSSSTGEDRPAEEPDSIGGDKVSSFAKILTPSDANNGGGFSVPRFCADSIFPPLDYTADPPVQVLTVTDVHGATWDFRHIYRGTPRRHLLTTGWSKFVNHKKLVAGDSVVFMKSSQGSLFVGIRRTLRFSVALAENRDPWLEEEDEEENSNDPPVFTRDGKGKVTVKAVAEAAELAARAMPFEVVYYPRAGWSDFVVKAEAVEGAMKAGWCPGMRVKMAVETEDSSRMTWFQGTVSSASAPDNGPWRGSPWRMLQVTWDEPEVLQNSKRISPWQVEIISTSSSLHTVFPPTKKFRAGALSDLEGDPYFPITGFTNSTMEHLSQTLLGYNTFPAGMQGARHDLFSPSSFSNFLNGNSHLHMGSSFFGKTTEPMLSTVSTELNIGNCQSGDFSPDSPSSLRSFGPEFTGTNNSNVPKIGSGSFLLFGKIIKPVEVELHDAGCIADDGCKSSTETECIDKPVDHSXXXXSGLM 574
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc413g00002 574 FunFam Auxin response factor 127 231 - -
Stsc413g00002 574 SUPERFAMILY DNA-binding pseudobarrel domain 125 233 IPR015300 -
Stsc413g00002 574 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 15 489 IPR044835 GO:0003677|GO:0006355|GO:0009725
Stsc413g00002 574 Pfam Auxin response factor 276 359 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Stsc413g00002 574 ProSiteProfiles B3 DNA-binding domain profile. 129 231 IPR003340 GO:0003677
Stsc413g00002 574 Gene3D - 126 231 IPR015300 -
Stsc413g00002 574 Pfam B3 DNA binding domain 129 229 IPR003340 GO:0003677
Stsc413g00002 574 MobiDBLite consensus disorder prediction 104 124 - -
Stsc413g00002 574 CDD B3_DNA 128 229 IPR003340 GO:0003677
Stsc413g00002 574 Gene3D - 314 388 - -
Stsc413g00002 574 SMART B3_2 129 231 IPR003340 GO:0003677
Stsc413g00002 574 MobiDBLite consensus disorder prediction 106 120 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc413g00002 Stsc-Chr413 12963 17014 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc413g00002 16 557 B3 DNA Binding Superfamily AT1G77850 48.410 1.23e-174 505
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Stsc413g00002 B3 3e-22 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc413g00002 - - aip:107624033 1053.89