Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc410g00007 ATGTCCAATCCACCTACCTTCTTCACACAGGCTAACGCTCTCCTCCGCAAGAACTTAACTTACCAGAAACGTCACGTCAAGACAAACCTCAGGCTCGTGCTCTTCCCGGTCATCCTCATGCTACTTCTCTTCGCGCTCCAAACGGCGCTCGACATCCTCCAGAGCGAGGCCAATCGAGGCGACGACAAGAAAAAGGCCGCCGCCTGCAAAGGCTGCGTATGCGTTCGCGACGGCTTGCCCCAATACCAACCCGAGTGCCCGGACTCTGATAAGGTCTGTGGGCCCCAATTCTTGCCGCCCGATGATGCCCAAAGGTGTCCCGTCTCAAACCCGCCGGAATGGCCTCCACTCTTGGACTTTGAAACCGGAGACGGATTCTGCAGCGATGACGCCGCCTGCAATGTCACCATGCTCTTCACAGGCACTGATCAGTCTTTTGCAGAAAGTTTGTTTGGAACTATGTTTCCAACTAACTTTAGTATAAATGAGTCTGATATCATGGCTAGTTTGGCATCAGTTGTTCTGGGAACTCAATTAGGGTTGCCATCAACCATTTTTTTGGACCAAGCATTAAGTGTTTACTCTCCTAGTACCCTTTATCATCTCCAACAAGATCAGTGTAAGGTGAACTCTAGTTTCTCCTTTAACTTCACCCAGGGAGACTCCAAATGGAACCAAGATGTTAAGGTCAGATGTACTCAGTCTTTAACCTTATGGCGTAAGAGTTTTTCCGATATATGGGATGAGGTAAAAAATAAAGGTGGTGATGGTTATGTAAAAGGAGGTTACATGCTTCACAAAAATCCTATAAGTGGAGCTTTTGACTTTCTAAATTCGAATAAGAATATTTTTAACGTTAGCTTTTTGACTGACAAAAGTGACGATAGAAGTTATATCAGTATGAGCCGCATTACTCGTTCTGTAAATATGATATCAAATGCCTTCTTGAAGTTTTTGCATGGAAATGGTACCAAAATGTTATTTGACTTTATAGAAGAAATGCCGAGACCTGCATCCCCAGACACAGGAAGGATTGATATAACTACTCTCCTGGGTGGTTTGTTCTATACATGGGTCATCCTTCAACTTTTTCCTGTTGTTCTGATAGCACTGGTGTATGAGAAGCAACACAATATAAGAATCATGATGAAAATGCATGGTCTTGGTGATGGAGCTTATTGGTTGATTTCCTATGGTTATTTTCTTGCCATTTCCATGGTCTACATGCTGTGCTTTGTGTTAGTTGGCGCACTCTTTGGATTCCGTTTCTTCAGATTGAATGACTATGGAATCCAGTTTGTGTTTTATTTTACCTATGTAAATCTACAAATTGCCTTAGCGTTTCTGGTGGCTACCCTGTTTTCGAATGTCAAGACTGCTACAGTTACATCATATATAGTTGTCTTTGGAACTGGACTGTTAGCTGCCTATCTTTTCCCATCTTTTGTAGAAAATGATCTGTTTCCAAGAAAATGGGTCATTGTTATGGAGTTGTATCCTGGGTTTGCTTTATTTCGCGGGCTATACGAGTTTGCAGATTATGTCACTGTTGGAAATAGTTCAGGGACTTTTGGCATGAGGTGGCAGGATCTGAATGATAGCACAAATGGCATGAAACAGATCCTAATTATCATGTCAATTGAGTGGATAGTCTTTGTTTTCGTTGCTTACTACCTTGATCAAGTTTCCTCTTCAGCAAGTGGTAGAAGCCCTCTTTTTTTCTTGGAAGGATTTAAGAAGACACATTTGTCTTCCCAAAAGGCCAATATGTCAATGCAGGGGTCAAGAGTCTTGGATCAGATGGATAAACCTGATGTAATCCAAGAGAGGGAGAAAGTGGAGCAGCTGCTACTTGAACCGGCCGTTAATTATGAAGCAGTGAGAGGGTTGTTCCTTGCTGTTCCTCAAGGGGAATGCTTTGGCATGCTTGGTCCCAATGGTGCTGGAAAGACTTCTTTTATTAGTATGATGATTGGTCGGACAAAGCCAACCTCTGGCACTGCATATGTTCAAGGCTTTGACATAAGAACTGATATGAATGGACTATATACTAGCATGGGTGTATGCCCCCAACACGACTTGCTGTGGGAAAGGTTGACAGGAAGAGAGCACCTGCTTTTCTATGGCAGACTTAAAAATCTCAAAGGTTCAGTCTTAACACAGGCAGTAGAAGATTCTCTCAAGAGTTTAAACCTTTTCAATGGAGGAGTTGCTGATAAACAAGCTGGAAAATACAGTGGAGGGATGAAGAGGAGGCTTAGTGTTGCAATTTCTTTGATTGGGAATCCCAGTATTGTTTATATGGATGAACCAAGCACTGGATTAGACCCTGCATCAAGAAAACGCTTATGGGATGTTATTAAGACTGCGAAAAAGGATCGTCCAATCATTCTCACTACTCATTCCATGGAAGAGGCAGAGGCCTTGTGTGATCGTTTAGGGATCTTTGTTGATGGCAGCTTGCAATGCATAGGAAATCCAAAGGAGTTGAAAGCAAGATATGGAGGAAGTTATGTGTTGACAATGACAACAAGTTTGGAGCATGAAAGGGAAGTGCAGAACATGGTGAGGCAGCTATGTCCTAATGCTAAAAAGGTGTACCATATTTCTGGGACACAGAAGTTTGAGTTGCCTAAAGAGGAGGTTAGAATAGGTGATGTATTTGGAGCCGTTGATTTTGCAAAGAGAAACTTCACAATTTCTGCATGGGGTTTAGCTGACACTACAATGGAAGATGTCTTCATTAAGGTTGCTGGTGGCAACCACCATTCTCAAAACCTCTCATAG 2787 0.4281 MSNPPTFFTQANALLRKNLTYQKRHVKTNLRLVLFPVILMLLLFALQTALDILQSEANRGDDKKKAAACKGCVCVRDGLPQYQPECPDSDKVCGPQFLPPDDAQRCPVSNPPEWPPLLDFETGDGFCSDDAACNVTMLFTGTDQSFAESLFGTMFPTNFSINESDIMASLASVVLGTQLGLPSTIFLDQALSVYSPSTLYHLQQDQCKVNSSFSFNFTQGDSKWNQDVKVRCTQSLTLWRKSFSDIWDEVKNKGGDGYVKGGYMLHKNPISGAFDFLNSNKNIFNVSFLTDKSDDRSYISMSRITRSVNMISNAFLKFLHGNGTKMLFDFIEEMPRPASPDTGRIDITTLLGGLFYTWVILQLFPVVLIALVYEKQHNIRIMMKMHGLGDGAYWLISYGYFLAISMVYMLCFVLVGALFGFRFFRLNDYGIQFVFYFTYVNLQIALAFLVATLFSNVKTATVTSYIVVFGTGLLAAYLFPSFVENDLFPRKWVIVMELYPGFALFRGLYEFADYVTVGNSSGTFGMRWQDLNDSTNGMKQILIIMSIEWIVFVFVAYYLDQVSSSASGRSPLFFLEGFKKTHLSSQKANMSMQGSRVLDQMDKPDVIQEREKVEQLLLEPAVNYEAVRGLFLAVPQGECFGMLGPNGAGKTSFISMMIGRTKPTSGTAYVQGFDIRTDMNGLYTSMGVCPQHDLLWERLTGREHLLFYGRLKNLKGSVLTQAVEDSLKSLNLFNGGVADKQAGKYSGGMKRRLSVAISLIGNPSIVYMDEPSTGLDPASRKRLWDVIKTAKKDRPIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKARYGGSYVLTMTTSLEHEREVQNMVRQLCPNAKKVYHISGTQKFELPKEEVRIGDVFGAVDFAKRNFTISAWGLADTTMEDVFIKVAGGNHHSQNLS 928
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc410g00007 928 Pfam ABC transporter 632 772 IPR003439 GO:0005524
Stsc410g00007 928 Gene3D - 617 872 IPR027417 -
Stsc410g00007 928 SMART AAA_5 636 819 IPR003593 GO:0016887
Stsc410g00007 928 PANTHER ATP-BINDING CASSETTE TRANSPORTER SUBFAMILY A ABCA 603 924 IPR026082 GO:0016020|GO:0055085|GO:0140359
Stsc410g00007 928 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 625 839 IPR027417 -
Stsc410g00007 928 FunFam ABC transporter A family member 7 611 871 - -
Stsc410g00007 928 ProSitePatterns ABC transporters family signature. 745 759 IPR017871 GO:0005524|GO:0016887
Stsc410g00007 928 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 611 843 IPR003439 GO:0005524
Stsc410g00007 928 CDD ABC_subfamily_A 626 831 - -
Stsc410g00007 928 Pfam ABC-2 family transporter protein 290 558 IPR013525 GO:0016020|GO:0140359
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc410g00007 Stsc-Chr410 30725 37183 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc410g00007 632 854 Calmodulin-binding Proteins AT2G36910 25.217 1.87e-12 69.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc410g00007 - - gmx:100805474 1098.57