Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc410g00006 ATGGGGAAGTCACCAGGAAAATGGATCAAAACAGTATTGTTTGGGAAGAAGTCATCCAAGTCAAATATTTCAAAAGGAAGAGAGAAGCTGGTTAATCAAAAGGAAGGAGTGGTGACTTCCAAGGTATCAGAAACTGATTTGGCTTTAGATCCAACCCCCGATACTGTTGCCAAAAATGAGGAAGAGCTGGTGCTAGAGAATAACGAGTCAGAAGTTATTTTAAATGAAAATCAAGAAATAAACACAGTGGGATCTGTTCTCCAAGATTCACCACCTGATCCAGAGAAAATAAAGCTGGAGGAAGCAGCAACAAAGGCACAGGCTGCTTTCAGGGGTTACTTGGCTCGAAGGGCATTTAGGGCCCTAAAAGGCATAATAAGGTTGCAAGCACTTATCCGTGGGCACCTGGTTAGGAGACAAGCTGTGGCTACATTATGCTGTATGTATGGCATTGTCAAGTTACAAGCACTTGTTCGAGGCAGAAAAGTTAGACATTCTGTTGTTGGATTTGAAATCCAAGAGAAGTGCAATCTATTGAAGTCTCCGGATGCCAAACCTGTCAAGGCAATTGCTGTACCTACAAAAATCACAAGTCTGTCAGCCAATGCTTTCATCCGTAAGCGTCTTGCTTCATCAACTACGATAATGGCCCTGCATTTGCAATATGTTCCTGGAGATCCAAATTCAGTTCTAAGCTGGTTGGAGCGCTGGTCAGCAACTAACTTCTGGAAACCAGTCCCCCAACCAAAGAAAATTCGAGACACTAAGCATCAGAGGAAGCAGGGTTCTGTTTCAGGGGGAGAAGCTCCATTGAGCAAGTCAAGACGTACCACCCGGAAGGTTCCTTCTGCAAGTTTTGACCCAGCCCCAGTGCAAGCAAATACTGAACTTGAGAAGCCAAAACGAAGCTTGAGGAAAATTTCAACCCAGCCCTCAGATACACTGCAGGAAAACCCACAAAGTGAGCTTGAAAAGGTAAAGCGTAACTTGAGAAAGGTTCACAACCCAGTTGTTGAGAATGCTGCTGTGCCAGAAGTAGAACCTGAGGCCCCAAAGCAACATTTGGAAAAGACAGCATTTACCCCGGTGCATGGTGTTTCAGAACAAGGGGTAATTAGTTCTGATGAGAAGATCAACAAAGAACCAACTCTAAGCATTTCCAATGTGCCTGATGTAGAACCTACTACAAATTCCACCAATAAGGAGCTGTCTGATATGCCTAGCAATTATCAAGTGGTTGTGCAATCAAAGCCTTTGACAGAGATTACAAGTAAAGATGAAAACATTGCTGAAGATGATTTGAAAATAGAGCCAAAAGATCTACCAGAAACTAGTTGCAAAGTTGAAAATTCTCACATAACAAATGGAGATTTGAGTCACAAGGAAGATCATGTGGGAACTGAAAACCAGAAGCCAAACAGAAAGGCCTCAAATGTAGCAAAGCAGGAGCGTGCAGAGAATGGTTTACAGAATAGTCCAACATTACCAAGTTACATGGCAGCAACGGAATCTGCCAAGGCAAAGTTGAGGGCTCAAGGATCCCCACGATTAGCAAACGATGGAAGTGAGAAGAACAATGCTGTACGGAGACATTCGCTGCCATCTTCAACTAACACCAAAATTAGCTCACAGTCACCTAGGACACAGAGACCAGTCCACTCAGGTGGCAAAGGAAGCAACAAACCTGTATCTTCTAGAGATGGCAATGGAAAGGTAATTCAAGCAGAATGGAGAAGGTGA 1740 0.4356 MGKSPGKWIKTVLFGKKSSKSNISKGREKLVNQKEGVVTSKVSETDLALDPTPDTVAKNEEELVLENNESEVILNENQEINTVGSVLQDSPPDPEKIKLEEAATKAQAAFRGYLARRAFRALKGIIRLQALIRGHLVRRQAVATLCCMYGIVKLQALVRGRKVRHSVVGFEIQEKCNLLKSPDAKPVKAIAVPTKITSLSANAFIRKRLASSTTIMALHLQYVPGDPNSVLSWLERWSATNFWKPVPQPKKIRDTKHQRKQGSVSGGEAPLSKSRRTTRKVPSASFDPAPVQANTELEKPKRSLRKISTQPSDTLQENPQSELEKVKRNLRKVHNPVVENAAVPEVEPEAPKQHLEKTAFTPVHGVSEQGVISSDEKINKEPTLSISNVPDVEPTTNSTNKELSDMPSNYQVVVQSKPLTEITSKDENIAEDDLKIEPKDLPETSCKVENSHITNGDLSHKEDHVGTENQKPNRKASNVAKQERAENGLQNSPTLPSYMAATESAKAKLRAQGSPRLANDGSEKNNAVRRHSLPSSTNTKISSQSPRTQRPVHSGGKGSNKPVSSRDGNGKVIQAEWRR 579
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc410g00006 579 MobiDBLite consensus disorder prediction 245 322 - -
Stsc410g00006 579 MobiDBLite consensus disorder prediction 424 446 - -
Stsc410g00006 579 ProSiteProfiles IQ motif profile. 123 145 IPR000048 GO:0005515
Stsc410g00006 579 MobiDBLite consensus disorder prediction 265 281 - -
Stsc410g00006 579 MobiDBLite consensus disorder prediction 372 423 - -
Stsc410g00006 579 PANTHER IQ-DOMAIN 5-RELATED 1 542 - -
Stsc410g00006 579 MobiDBLite consensus disorder prediction 528 567 - -
Stsc410g00006 579 MobiDBLite consensus disorder prediction 483 499 - -
Stsc410g00006 579 Gene3D - 97 147 - -
Stsc410g00006 579 Pfam Protein of unknown function (DUF4005) 482 561 IPR025064 -
Stsc410g00006 579 ProSiteProfiles IQ motif profile. 99 127 IPR000048 GO:0005515
Stsc410g00006 579 SMART iq_5 98 120 IPR000048 GO:0005515
Stsc410g00006 579 SMART iq_5 121 142 IPR000048 GO:0005515
Stsc410g00006 579 MobiDBLite consensus disorder prediction 361 579 - -
Stsc410g00006 579 Pfam IQ calmodulin-binding motif 101 120 IPR000048 GO:0005515
Stsc410g00006 579 Pfam IQ calmodulin-binding motif 123 140 IPR000048 GO:0005515
Stsc410g00006 579 MobiDBLite consensus disorder prediction 454 470 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc410g00006 Stsc-Chr410 21471 27357 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc410g00006 1 579 IQD Protein Family AT1G74690 44.623 5.44e-126 380
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc410g00006 - - gmx:100807118 792.341