Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc40g00025 ATGGTTGAGAGGTTTCATTTAGTCACTAATGTTCACCAACGCAACATGCATTGGGACATCCAGGTTTATGTTATCAGAAAGTATGATGTTCCAAGCTCTGAAGATCAAGCCATCATCAAGAGCGTTGACATGATGTTGCAGGATAGACAGGGTGGTAGGATTCATGCTTCCATTCCGAAGAGACTGATTAGTACATGGTTGGATAGAATAAAGGAGTTCACTATGTACAACATGAGAGAATTTGTGGTGGTTGACAAGAGAACCAGGGTTAGAGCGACGGAAGTGAAATGGAGTCTGCTATTCTGTATTCGAACTGAAGTTCAAGAGGTTGAAGTTCCAACCTTTCCACTAGAGGCGTTTAGGTTCAGAACAATACCTGAGCTGACTGCATCGGCAGTAGTCTCTGAGAATGAGCTTTTTGATCTAGTTGCTGAAGTTGTGGGGAAAGAGGACCCTAGAGAGCTGGTAACAAGCCTTGGGAAGGAAACCAAGAGGATGGCTACTAATATCCAGGATCTTGAGAAAAACACCATTCGGTGCACCCTGTTTGGTACTTGTGTGGATGACTTAACCCCACTCATGGCACAAGAGAGGACTGAACCGCTTATTGTGGTTCTTCAGTACTTCAGGATTAACAGGTGGGATGGGAAGACATCTGTTCAGAGTCATTTTGACATATCTAAGGTCTGTTGTGACCTCAGTCTTAAGGAGATTCAAGACTTTCTTAATAGCATGGTTGATACTAGAACAACAAGCTCAGTACGCATTACTCAGATGCAGTCACAGAGTAGTGGCCAGGGGATAGAGGAACTGAGGCGTGGCCAGGTTGAAATCAAAACTATTGAGGAGGTTTGGTCTTTAAAAGAGGAGTCATTTCCTTGGATCGCTGGGACAGTAGCCTCTATAAATACTAGAAAGAATGGTTGGTATTATAAGGCTTGTGAAAGTTGTCCAAAGAAGGTTGATCGCAAAGAGAACAACATGTGGGAGTGTACCAGATATAATAAGATTACTAGCACCTTTTTATACAGGTACAAGATTGAGATAGTCGTGTATGATGATACTGCCACTCTCACACTGCTTTTATGGGACAATGAGGTAGCTGATCTGGTTGGGGTAAAAGCACAAACGCTTTTGGATAGCTGGGAGGGAAATAAGGATTGTTACCCTGATGTCCTTGAAAATTTATTTGAGAAACGGCTGCTCTGGAAAGTCAGCGTCAAAGAAAAAAACCTTAGTGGGGAAGACACCGTCTTCCGTGTGATGAAGATCTGCGATGATGAGGACCTTGTGGATCGCTATTATCCCAAGGATGAGACTGTTGACAACAAGTCTGACTATAACCTTGCTGAAACTGGTGGTAGCAATGAAGTCGATTTTTAG 1383 0.4309 MVERFHLVTNVHQRNMHWDIQVYVIRKYDVPSSEDQAIIKSVDMMLQDRQGGRIHASIPKRLISTWLDRIKEFTMYNMREFVVVDKRTRVRATEVKWSLLFCIRTEVQEVEVPTFPLEAFRFRTIPELTASAVVSENELFDLVAEVVGKEDPRELVTSLGKETKRMATNIQDLEKNTIRCTLFGTCVDDLTPLMAQERTEPLIVVLQYFRINRWDGKTSVQSHFDISKVCCDLSLKEIQDFLNSMVDTRTTSSVRITQMQSQSSGQGIEELRRGQVEIKTIEEVWSLKEESFPWIAGTVASINTRKNGWYYKACESCPKKVDRKENNMWECTRYNKITSTFLYRYKIEIVVYDDTATLTLLLWDNEVADLVGVKAQTLLDSWEGNKDCYPDVLENLFEKRLLWKVSVKEKNLSGEDTVFRVMKICDDEDLVDRYYPKDETVDNKSDYNLAETGGSNEVDF 460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc40g00025 460 SUPERFAMILY Nucleic acid-binding proteins 121 244 IPR012340 -
Stsc40g00025 460 PANTHER OS03G0429900 PROTEIN 5 424 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Stsc40g00025 460 Pfam Replication factor-A C terminal domain 297 418 IPR013955 -
Stsc40g00025 460 Pfam Domain of unknown function DUF223 44 114 IPR003871 -
Stsc40g00025 460 SUPERFAMILY Nucleic acid-binding proteins 6 110 IPR012340 -
Stsc40g00025 460 SUPERFAMILY Nucleic acid-binding proteins 277 425 IPR012340 -
Stsc40g00025 460 Gene3D - 255 430 IPR012340 -
Stsc40g00025 460 CDD RPA1_DBD_A_like 20 107 - -
Stsc40g00025 460 CDD RPA1_DBD_C 277 424 IPR047192 -
Stsc40g00025 460 Gene3D - 114 254 IPR012340 -
Stsc40g00025 460 Gene3D - 7 111 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc40g00025 Stsc-Chr40 160280 163862 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc40g00025 18 418 Core DNA Replication Machinery Family AT4G19130 20.714 5.07e-09 56.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc40g00025 - - aip:107630584 397.512