Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc40g00007 ATGGAGAGAGGTAAATACTTAGCATTGGTTGGAACCGGTGCTCTTTTTGGCTCTGTATCTACCTTCGTCCTTCTTAGGCTCCTTCAAAACCATAAAAAATTGGTGCGGCAGTACAATAAGAATGCTACTGAGTTAAATGGTGTTGAGGGTTGCACTATTGCTGGAAAGAAGAATGATAATGCAGTTAATGAAGATCTCTTGAAGGATGAGATTGTTTCTGAACATCTAACTAGGAACATTCAGTTTTTTGGCTTTGAGTCTCAGCAGAAAGTGAGTGCATCATATGTTGTAGTAATTGGTCTTGGAGGGGTTGGCAGTCATGCTGCCTCTATGCTCTTGAGATCAGGTGTTGGCAAGCTTCTTCTTGTGGACTTTGACCAGGTTTCTCTTTCATCATTAAATCGACACGCTGTTGCAACAAGAGCAGATGTTGGCATCCCAAAAGCGCAGTGCCTTAAGGAGCATTTCTTATCTATCTTTCCTGAGTGCCAAGTAGATGCAAAAGTAATGTTATATGATTCATCTACCGAAGAAGAAATTTTGTCAGGCTACCCTGACTTTGTCTTGGATTGTATTGATAACATCGATACCAAGGTGGCACTTCTTGCTGCTTGTGTACGGAGGGGCTTGAAGGTGTTATCAGCCACTGGGGCTGGTGCCAGAGCTGATCCAACTAGAATAAGGATTGCTGATTTAAGAGAGTCAACTAATGATCCATTGTCTCGATCAGTGAGACACCGTTTGAGGAAAGATCATGGCATTGAAGGCGGCATCCCTGTTGTATTTTCTTTAGAAAAACCCAAAGTTAAGTTGCTTCCATTTAAGGGTCCAAGTGGTGAAGAGGAAAATCCATCAGACTACCAGATAGTACCAGGCTTTAGGGTCCGTATCATACCCGTGTTGGGTACAATCCCTGCAATATTTGGACAAGTCATGGCATCCTATGTTCTGACAGAATTAGCAGGATTTCAAGTTCAAACAGAACCAATAGTCAATTTTGACACAGATCATTACCATACTCTTCATCAACGCCTTATCGAGCATGAGGAGTTAGTATATGGAACAGCACAGCAAGTGCAGGTAGATGTCGAAGAAGTGATGTATGTTGTAAAAGAATTATGGCATGGAAGAAGTGCTAGAGACCAGCTTGTGAAAGAAGTTGGACGAGGAATGTGGCGATCAGTTAATGAATTGATGCTTGTAAGGTGGGACTGCGAAAAGCCGGCTTCTATATCAAATTTAATTCTTTTGAAATTCAAAGAGGCTGATGAGCATGAGTCTAGGACATTGGAAGATATAAAGGAAAAGGAACCTGAATTCTACAACAGAGTAAATGCAGTGTTAAAGAGAGCTGAAATTGACTTTGGCTATGCACATTAG 1380 0.4152 MERGKYLALVGTGALFGSVSTFVLLRLLQNHKKLVRQYNKNATELNGVEGCTIAGKKNDNAVNEDLLKDEIVSEHLTRNIQFFGFESQQKVSASYVVVIGLGGVGSHAASMLLRSGVGKLLLVDFDQVSLSSLNRHAVATRADVGIPKAQCLKEHFLSIFPECQVDAKVMLYDSSTEEEILSGYPDFVLDCIDNIDTKVALLAACVRRGLKVLSATGAGARADPTRIRIADLRESTNDPLSRSVRHRLRKDHGIEGGIPVVFSLEKPKVKLLPFKGPSGEEENPSDYQIVPGFRVRIIPVLGTIPAIFGQVMASYVLTELAGFQVQTEPIVNFDTDHYHTLHQRLIEHEELVYGTAQQVQVDVEEVMYVVKELWHGRSARDQLVKEVGRGMWRSVNELMLVRWDCEKPASISNLILLKFKEADEHESRTLEDIKEKEPEFYNRVNAVLKRAEIDFGYAH 459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc40g00007 459 Pfam ThiF family 77 339 IPR000594 -
Stsc40g00007 459 Gene3D - 67 333 - -
Stsc40g00007 459 PANTHER TRNA THREONYLCARBAMOYLADENOSINE DEHYDRATASE 10 454 IPR045886 -
Stsc40g00007 459 SUPERFAMILY Activating enzymes of the ubiquitin-like proteins 75 334 IPR035985 GO:0008641
Stsc40g00007 459 CDD YgdL_like 83 317 - -
Stsc40g00007 459 FunFam tRNA threonylcarbamoyladenosine dehydratase 2-like 68 327 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc40g00007 Stsc-Chr40 23478 29421 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc40g00007 117 219 Sulfurtransferasese or Rhodanese AT5G55130 31.068 1.76e-06 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc40g00007 K22132 - gmx:100815445 791.571