Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc40g00005 ATGGATGCACAGGCCAAGAAAAAGGCATATTTTCGTGCTAAATTGGCCCAGCAGAAAGAAAAGCGTATAAATTCTCCCCTTGTAAGGTATAATGATTCCCATCAACCTGTTTGTCGGGTTTGTGATGTTGTTCTGAAGTCTGAATCAATATGGGATGCACACCAAATCTCCCGTAAGCATCGCGAGGCAATTGATAACCTTAAAGCCAATGCAGCTGGATTAACTCAGCAAAACAATGCAAAGCCGGCTATTGGTAACAGTTTTCCGAAGGTCAAACCTGAACAGCCTTCCGAATCACTATCGAAAAAGCCTGAACCTTCAAAAGAAGTACCTAAAGCCCAGTCGTCGTCTGTGCTTCCGCCAAATTTTTTTGATGACAGCGCAAGGAAAACTGAAAAGAAATCATCTGATTCAGGAAGAAATGTGGGGGTTTCTGCTCAAAATCAGGTGTCAAAATCAGAGGAGAAAAGTCACTTTCATGGTGATGATGCTGTGCCATCAAAGGTTAGTCAAGCAAAAGCAGAGGCTGGTCAGACCTCCACCAAAACTTCTGATGCAGAGGACAACCAAGCCAAAGGCGCTCTGCCTGAAGGCTTTTTTGACAACAAGGAAGCAGATTTGCGGGCACGTGGCATTAAGCCTGTGAAGCCAGATGTCAAAGATGAGTACAAGGAATTTGAGAAGCTGATTCAAGAGGACTTGCAGGAGGTGGATAACCGATTGGAAGAAGAAGAGATTGATGCTGCAGAAATGATAGAAGAAGCTGAATCCGTTGAGCAGAAGATCTTCAGGGAGAGAGTGGAAATGTTGAAGAAGAGGAGGTTGGAGCTGAAGGCAGCAAAGTCAGCAAAGCGTATTAAAACTTCTGAGCCTGAAACCAAGGAGGAGTCAAGGCATGAAGAAAAGTCATCAAGTGATGATGAAAGTGGTGAGAATTTTGCTGTGGACTGGAGAGCACAACACTTGTGA 969 0.4427 MDAQAKKKAYFRAKLAQQKEKRINSPLVRYNDSHQPVCRVCDVVLKSESIWDAHQISRKHREAIDNLKANAAGLTQQNNAKPAIGNSFPKVKPEQPSESLSKKPEPSKEVPKAQSSSVLPPNFFDDSARKTEKKSSDSGRNVGVSAQNQVSKSEEKSHFHGDDAVPSKVSQAKAEAGQTSTKTSDAEDNQAKGALPEGFFDNKEADLRARGIKPVKPDVKDEYKEFEKLIQEDLQEVDNRLEEEEIDAAEMIEEAESVEQKIFRERVEMLKKRRLELKAAKSAKRIKTSEPETKEESRHEEKSSSDDESGENFAVDWRAQHL 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc40g00005 322 MobiDBLite consensus disorder prediction 138 152 - -
Stsc40g00005 322 Gene3D Classic Zinc Finger 33 69 - -
Stsc40g00005 322 PANTHER UNCHARACTERIZED 1 322 IPR040050 GO:0003676|GO:0005681|GO:0008270
Stsc40g00005 322 SUPERFAMILY beta-beta-alpha zinc fingers 31 70 IPR036236 -
Stsc40g00005 322 Coils Coil 227 261 - -
Stsc40g00005 322 MobiDBLite consensus disorder prediction 172 188 - -
Stsc40g00005 322 Coils Coil 57 77 - -
Stsc40g00005 322 MobiDBLite consensus disorder prediction 279 322 - -
Stsc40g00005 322 MobiDBLite consensus disorder prediction 73 202 - -
Stsc40g00005 322 MobiDBLite consensus disorder prediction 279 314 - -
Stsc40g00005 322 Pfam Zinc-finger of C2H2 type 38 60 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc40g00005 Stsc-Chr40 17415 20772 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc40g00005 1 322 C2H2 Transcription Factor Family AT3G02860 51.672 3.30e-92 275
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc40g00005 K13104 - gmx:100808515 377.481