Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc40g00002 ATGAAGACTATTCTCTCTTCCGAGACTATGAACATTCCCGAAGGCGTAAGCATCAAGGTTCACGCTAAGGTCGTCGAGGTTGAAGGTCCCAGGGGCAAGCTCCTCATCAAGGATGAGAACGGCCAGAAGAAGCTCAAAATCGATGCCTGGTTTGGCTCCCGGAAAACCTCCGCCGCTATCCGCACTGCCCTTAGCCATGTCGAGAACCTGATCACCGGCGTCACCAAGGGCTACCGTTACGAGATGAGATTTGTCTACGCCCACTTTCCAATCAATGCTAGCATCTCCAGCAACAACGCCTCCATCAAGATCCGTAACTTCCTTGGTGAGAAGAAGGTGAGGAAAGTGGACATGCTTGAGGGAGTCTCTGTGGTAAGATCCGAGAAGGTGAAGGATGAACTCATTTTGGATGGAAATGACATTGAGCTTGTGTCTCGGTCCTGCGCCTTAATTAACCAGAAATGCCATGTGAAGAACAAGGATATTAGGAAGTTCTTTGATGGTATCTATGTCAGCGAGAAAGGAACAATTGTTGAAGAGTAG 543 0.4862 MKTILSSETMNIPEGVSIKVHAKVVEVEGPRGKLLIKDENGQKKLKIDAWFGSRKTSAAIRTALSHVENLITGVTKGYRYEMRFVYAHFPINASISSNNASIKIRNFLGEKKVRKVDMLEGVSVVRSEKVKDELILDGNDIELVSRSCALINQKCHVKNKDIRKFFDGIYVSEKGTIVEE 180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc40g00002 180 SUPERFAMILY Ribosomal protein L6 1 77 IPR036789 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Stsc40g00002 180 Gene3D - 78 180 IPR036789 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Stsc40g00002 180 Pfam Ribosomal protein L6 89 168 IPR020040 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Stsc40g00002 180 Pfam Ribosomal protein L6 12 77 IPR020040 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Stsc40g00002 180 PANTHER 60S/50S RIBOSOMAL PROTEIN L6/L9 1 178 IPR000702 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Stsc40g00002 180 ProSitePatterns Ribosomal protein L6 signature 2. 153 174 IPR002359 GO:0003735|GO:0005840|GO:0006412
Stsc40g00002 180 FunFam 60S ribosomal protein L9 78 180 - -
Stsc40g00002 180 FunFam 60S ribosomal protein L9 1 77 - -
Stsc40g00002 180 PIRSF RPL6p_RPL6a_RPL9e_RPL9o 1 177 IPR000702 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Stsc40g00002 180 Gene3D - 1 77 IPR036789 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Stsc40g00002 180 SUPERFAMILY Ribosomal protein L6 78 174 IPR036789 GO:0003735|GO:0005840|GO:0006412|GO:0019843
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc40g00002 Stsc-Chr40 5684 6710 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc40g00002 1 180 Cytoplasmic Ribosomal Protein Gene Family AT1G33140 77.202 1.54e-106 301
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc40g00002 K02940 - gmx:100306058 312.768