Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc409g00005 ATGTCTGAACTGTCTGTTGTGTTAACATCAAAAAATGGAGAAAATGAGGCCTACTTGTCTGAAATTGAGTCCATTGGGCAAGCATATGATGAAAAGCAGACTCAAAACCAGCATATGCTGCAGCAGATTACTGAGAGAGATGATTACAATATTAAGCTTGTTTTAGAAGGTGTTAGGGCAAGACAAAAGCAAGATTCTTTAGTCATGGAAAAGCGGGTAATGCAACAAGAGATCCAGCAAGCAAATGTAACCCGAAATTTATATGATTCAAAAGCTGCAAGAATTGAGGACCAGTTGAAATTTTGTTCAGATCAAATTCAAAGACTAATAGAGGATAAGATGCAAAAGGTGCAATCTAAAGCTGGTAGTAGTCGAGTTACTTGTATGGAGTCACATGTTGAACTTGAGAAAGAAAGATTTTCCAAGAAAAGACTAGAGGAGGAGCTGGAGGTTTCTAGGAGAAAGCTTTCATGCCTTAAAGCACAGAATGAGGGATGCTTGGTGATTGAAAAACTCCAAGAGGAACTGGCAGAGTACCGGGAAATTGTAAAATGCAGTATCTGCCAAGACAGGACAAAAGAGGTGGTAATTACAAAATGCTACCACTTGTTTTGCGGTACATGCATCCAGAAAGTATCTGGGAGTCGACACCGCAAATGTCCACAGTGTAGCACAAGCTTTGGGGCTAATGATGTTAAGCCTGTTTACTTAAATGGTGTATATGCTCAACAGTTGTTAAGGAACATTGGCATGGATTACCGAGTTCCTGTCCAGTTTTGCGTCTTATGTGTTGTATTGTTTAAGCCTTGGTTCTGCCAGTTTGAGCAAATGATCTGTGGGACGTCAATAGGATATGATTATATGGACATGGTGCCCCCGGGTACAGTTAAACTCAATAGGCATGAACCGATCCGGCAGAAGCTTTTTCAGTTCCACCAATACAATAACAACAGAACCCTAACCATTAGAATCCCACTTCATATGTCCAGTCACTTCCTCAGCCCATCCGCCACCACTGTCAGCGACGCGTTTAGGTACCTGCTCGACTTGTCCTTCAGCGATATGAAGAACACCTCGCCGAAAACATGGAGATGA 1095 0.4183 MSELSVVLTSKNGENEAYLSEIESIGQAYDEKQTQNQHMLQQITERDDYNIKLVLEGVRARQKQDSLVMEKRVMQQEIQQANVTRNLYDSKAARIEDQLKFCSDQIQRLIEDKMQKVQSKAGSSRVTCMESHVELEKERFSKKRLEEELEVSRRKLSCLKAQNEGCLVIEKLQEELAEYREIVKCSICQDRTKEVVITKCYHLFCGTCIQKVSGSRHRKCPQCSTSFGANDVKPVYLNGVYAQQLLRNIGMDYRVPVQFCVLCVVLFKPWFCQFEQMICGTSIGYDYMDMVPPGTVKLNRHEPIRQKLFQFHQYNNNRTLTIRIPLHMSSHFLSPSATTVSDAFRYLLDLSFSDMKNTSPKTWR 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc409g00005 364 ProSitePatterns Zinc finger RING-type signature. 200 209 IPR017907 -
Stsc409g00005 364 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 167 238 IPR013083 -
Stsc409g00005 364 Pfam Zinc finger, C3HC4 type (RING finger) 183 225 - -
Stsc409g00005 364 SUPERFAMILY RING/U-box 179 237 - -
Stsc409g00005 364 ProSiteProfiles Zinc finger RING-type profile. 185 224 IPR001841 -
Stsc409g00005 364 Coils Coil 92 112 - -
Stsc409g00005 364 PANTHER RING FINGER PROTEIN-RELATED 112 237 IPR013956 GO:0004842|GO:0010390
Stsc409g00005 364 Coils Coil 169 189 - -
Stsc409g00005 364 CDD RING-HC_Bre1-like 178 235 - -
Stsc409g00005 364 SMART ring_2 185 223 IPR001841 -
Stsc409g00005 364 FunFam E3 ubiquitin protein ligase 166 237 - -
Stsc409g00005 364 Coils Coil 135 162 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc409g00005 Stsc-Chr409 39247 45150 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc409g00005 185 258 C3H Transcription Factor Family AT3G58030 33.333 2.65e-07 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc409g00005 K10696 - gmx:100790337 368.237