Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc407g00007 ATGGCATCCACATTTATCACGTTGCCAATCCCTTTCCTACACAGCAGACCCACGTCCTTCTCTTTCTCTAACAAGCAATTCCCAGTTTTGAAAAGGAACTCTTTGAAAGTCAATGCACTAGTTTCCAACAAATGGGAACCAACCAAGGTTGTGCCTCAGGCTGATAGAGTCCTTATTCGTTTGGAGCAGCTACCAGATAAAACTACTGGTGGAGTTTTGTTGCCCAAGTCAGCTGTTAAATTTGAGCGATATCTGCTTGGAGAAGTCCTCTCTGTTGGTGCTGAGGCAGAACAAATAAAAGCTGGATCCAAGGTTGATTTGGGGACCGACGAAAAGCACTGCTTCTGTAAAGCAAGCGACCTGTTGGCTGTGGTTGAGTAG 381 0.4541 MASTFITLPIPFLHSRPTSFSFSNKQFPVLKRNSLKVNALVSNKWEPTKVVPQADRVLIRLEQLPDKTTGGVLLPKSAVKFERYLLGEVLSVGAEAEQIKAGSKVDLGTDEKHCFCKASDLLAVVE 126
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc407g00007 126 PANTHER 10 KDA HEAT SHOCK PROTEIN 48 124 IPR020818 GO:0005524|GO:0006457|GO:0044183
Stsc407g00007 126 CDD cpn10 49 125 IPR020818 GO:0005524|GO:0006457|GO:0044183
Stsc407g00007 126 SMART Cpn10_2 49 125 IPR020818 GO:0005524|GO:0006457|GO:0044183
Stsc407g00007 126 FunFam 10 kDa chaperonin 45 126 - -
Stsc407g00007 126 Pfam Chaperonin 10 Kd subunit 49 107 IPR020818 GO:0005524|GO:0006457|GO:0044183
Stsc407g00007 126 SUPERFAMILY GroES-like 49 126 IPR011032 -
Stsc407g00007 126 Gene3D GroES chaperonin 45 126 IPR037124 GO:0006457
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc407g00007 Stsc-Chr407 35765 38763 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc407g00007 16 126 Calmodulin-binding Proteins AT5G20720 28.148 4.92e-07 45.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc407g00007 K04078 - gmx:100306026 180.259