Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc407g00002 ATGTTTCGCCGAGCAACCACCCTCCTCCGCCAACCACTGATGGGCGCTACATCCCGGCGATTCTCGACGGATCTGCCGGCGGCACCCGTAGAAGATTCGACGTTCGTGGAGGCGTGGAAGAAAGTGAGCCCAAACGTGGAAGCACCGAAGACTCCATTGGCTTACATGAAGCCTCGGCCAGCCACGCCGACTTCCCTTCCTTCGAAGCTGACTGTCAACTTCGTCCTCCCTTACGCTTCCGAACTCTCCGCTAAAGAGGTTGACATGGTAATAGTACCGGCCACAACTGGGCAAATGGGTGTTCTCCCTGGACATGTTGCAACCATTGCAGAGTTGAAACCCGGTGTCCTATCCGTTCATGAAGGCAATGATGTGACCAAGTACTTTATCAGCAGTGGCTTCGCCTTCATCCACGCAAATTCCGTTGCTGATATAATAGCTGTTGAAGCTGTACCAGTAGACCGAATTGATGTGAACTTAGTCCAGAAGGGGCTTCAAGAGTTCACGCAGAAGCTGAACTCTGCCACAACTGATTTGGAGAAAGCTGAAGCTCAGATTGGAGTTGATGTCCATAGTGCTCTCAACTCAGCTCTTACAGGCTAA 603 0.5191 MFRRATTLLRQPLMGATSRRFSTDLPAAPVEDSTFVEAWKKVSPNVEAPKTPLAYMKPRPATPTSLPSKLTVNFVLPYASELSAKEVDMVIVPATTGQMGVLPGHVATIAELKPGVLSVHEGNDVTKYFISSGFAFIHANSVADIIAVEAVPVDRIDVNLVQKGLQEFTQKLNSATTDLEKAEAQIGVDVHSALNSALTG 200
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc407g00002 200 Gene3D - 59 156 IPR036771 -
Stsc407g00002 200 PANTHER ATP SYNTHASE DELTA/EPSILON CHAIN 28 200 IPR001469 GO:0015986|GO:0045261|GO:0046933
Stsc407g00002 200 SUPERFAMILY Epsilon subunit of F1F0-ATP synthase N-terminal domain 70 151 IPR036771 -
Stsc407g00002 200 Coils Coil 165 185 - -
Stsc407g00002 200 CDD F1-ATPase_delta 70 193 IPR001469 GO:0015986|GO:0045261|GO:0046933
Stsc407g00002 200 Gene3D - 157 199 - -
Stsc407g00002 200 Pfam ATP synthase, Delta/Epsilon chain, beta-sandwich domain 70 142 IPR020546 GO:0015986
Stsc407g00002 200 NCBIfam ATP synthase F1 subunit epsilon 82 185 IPR001469 GO:0015986|GO:0045261|GO:0046933
Stsc407g00002 200 Hamap ATP synthase epsilon chain [atpC]. 68 188 IPR001469 GO:0015986|GO:0045261|GO:0046933
Stsc407g00002 200 FunFam ATP synthase delta 59 156 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc407g00002 Stsc-Chr407 7463 9138 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc407g00002 1 200 Primary Pumps ATPases AT5G47030 71.707 1.47e-106 303
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc407g00002 K02134 - gmx:100799603 342.813