Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc404g00004 ATGACTCACCATAACAAGGTTATGCTTTTGGGACATAGTGATACTTATACTCAAGATAAGAATATGCAAGTTACTATTGCTTTTAACCATTTTGGAGAAGGCCTGGTTCAGAGGATGCCAAGATGTAGGCATGGATACTTCCATGTTGTGAACAATGACTATACTCATTGGGAAATGTATGCCATTGGAGGAAGTGCTGCACCAACTATCAACAGCCAAGGCAATAGATTTCTTGCTCCCAATGACAATACCTTCAAAGAGGTGACAAAGCGTGAGGACACACCAAAAAGTAAATGGAAGAATTGGAATTGGAGATCTAATGGAGATTTGATGTTAAATGGTGCATTCTTTACTTCTTCTGGAGCAGGTGCATCTTCAAGCTATGCAAGAGCTTCAAGTTTGGCAGCAAAACCTTCTTCTCTTGTTGGTTCTATCACTTCTTCGGCCGGATCCCTTAAATGTAGAAAGGGATCACGCTGTTGA 483 0.4079 MTHHNKVMLLGHSDTYTQDKNMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWEMYAIGGSAAPTINSQGNRFLAPNDNTFKEVTKREDTPKSKWKNWNWRSNGDLMLNGAFFTSSGAGASSSYARASSLAAKPSSLVGSITSSAGSLKCRKGSRC 160
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc404g00004 160 SMART amb_all 1 83 IPR002022 -
Stsc404g00004 160 PRINTS Pollen allergen Amb family signature 38 57 IPR018082 -
Stsc404g00004 160 PRINTS Pollen allergen Amb family signature 131 154 IPR018082 -
Stsc404g00004 160 PRINTS Pollen allergen Amb family signature 60 79 IPR018082 -
Stsc404g00004 160 PRINTS Pollen allergen Amb family signature 102 126 IPR018082 -
Stsc404g00004 160 Pfam Pectate lyase 2 77 IPR002022 -
Stsc404g00004 160 SUPERFAMILY Pectin lyase-like 2 160 IPR011050 -
Stsc404g00004 160 Gene3D - 1 153 IPR012334 -
Stsc404g00004 160 PANTHER PECTATE LYASE 18-RELATED 1 158 IPR045032 GO:0030570
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc404g00004 Stsc-Chr404 10177 11602 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc404g00004 1 160 Polysaccharide Lyase AT4G13710 79.375 3.04e-92 273
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc404g00004 K01728 - gmx:100782388 293.893