Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc3g00040 ATGGAGCAGGAGAAGGAGAAGAAGAAGCAAAACCAGAATCAGATTAGCATTCACGACATCCTCCCTCTTGACCTGATTCAGAGAATCCTACTGAGGTTGCCTGTCAAAAAACTAGCTCGCCTCAGGTGCGTTTCCAAGCTTTGGTGCTCTCTCACTTCCGATCCACACTTGGCCGAATTGCATCTTCAACACTCTCCCGAACCCACCCTCGCATGCCTCTTCATAGAACCCTTCGGTGAAGCTCACTTAGTTCACCCAGAAGAACTATTTACTGACCGATATTATGAAATCGAAGACGTATCTCTCCCTTTCAAGAAGACGAACCCACCTTCTATTGTTTGTGTGATGGGATCCTGCAGAGGCTTCATTCTCTTAAACGTACGCCCACATTTTCTTGTAGTATGGAACCCACTCACCGGATCCAGAAAAAAAATTTCTTACTCTTTTATCGTTTCTCGTAGTGTGAGACCGAGCTGGGCCACTATGTTTCAAGGTGTTCCGGCTCTGTATGGACTTGGTTATGATGCCTCACAAGATGACTACTTAGTTGTTGTAGGTTGGCTTGATATTAACTACAATCACCACTTAGATTACTTTTCCTTGAGAACCAATTCATGGATTAATCTGGATGCTGCACTTCCCAAACCCTTGGACTCGAGGGGTTGGAAATGTCGTGGGTTGTTCTTGAACGGCTCTATTCATTGGTTGATGTGGTCTTCCCATCACAAAGTTGACAGTGAAGCTCTTCTTACATTTGATTTGAAGGAAAGAAGTTTCTCAATGATATCTATCCCAGAGCAACTGCTAACGTTTCGGCAATATCGTGATGCCGATCTTGGCCTACTAGGAGGGTGCCTAGCCATATATTGTCGGGGCTATGATGCTGATAAAACTGACATATGGGTGATGAAAGACTACAAAGTGCATTCATCTTGGACTTTGTGTGTGATTCCAGGTCTAGATGTTAAGCCATTGTGCTTATCCAATGGTGGTGACATTATTGCATTAGATTGTCTTCCGCCTCTCCAATATAGGCGGTTATGGTTTGCCAAATATAATCTCAGAGAAGATCTGCTCCAACGTTTTGAATGTCCACCTCTCGATCCATATCATTTGCATCATGAAAATTACTATGTATATACAGAGAGTCTGTTGCTACTCCCTAGTTATAGTAAGCACAAGAAGAAGAAGAAGGAGAAGAAGAAGAAGAAGGTTATGTAA 1221 0.4316 MEQEKEKKKQNQNQISIHDILPLDLIQRILLRLPVKKLARLRCVSKLWCSLTSDPHLAELHLQHSPEPTLACLFIEPFGEAHLVHPEELFTDRYYEIEDVSLPFKKTNPPSIVCVMGSCRGFILLNVRPHFLVVWNPLTGSRKKISYSFIVSRSVRPSWATMFQGVPALYGLGYDASQDDYLVVVGWLDINYNHHLDYFSLRTNSWINLDAALPKPLDSRGWKCRGLFLNGSIHWLMWSSHHKVDSEALLTFDLKERSFSMISIPEQLLTFRQYRDADLGLLGGCLAIYCRGYDADKTDIWVMKDYKVHSSWTLCVIPGLDVKPLCLSNGGDIIALDCLPPLQYRRLWFAKYNLREDLLQRFECPPLDPYHLHHENYYVYTESLLLLPSYSKHKKKKKEKKKKKVM 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc3g00040 406 CDD F-box_AtFBW1-like 19 56 - -
Stsc3g00040 406 Gene3D - 3 57 - -
Stsc3g00040 406 Pfam F-box domain 21 57 IPR001810 GO:0005515
Stsc3g00040 406 Pfam F-box associated 226 313 IPR006527 -
Stsc3g00040 406 NCBIfam F-box protein interaction domain 117 315 IPR017451 -
Stsc3g00040 406 SMART fbox_2 21 60 IPR001810 GO:0005515
Stsc3g00040 406 SUPERFAMILY Galactose oxidase, central domain 113 315 IPR011043 -
Stsc3g00040 406 SUPERFAMILY F-box domain 15 67 IPR036047 GO:0005515
Stsc3g00040 406 PANTHER OS02G0783600 PROTEIN 27 314 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc3g00040 Stsc-Chr3 289393 290815 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc3g00040 170 335 Carbohydrate Esterase AT1G25141 23.256 7.39e-07 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc3g00040 - - adu:127739682 384.03