Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc3g00038 ATGACCAATTTGGCAGTTGCAGATGCAATGTTCAAGCAAGAGTACTTCACTGCTGCTGCTGCTCATGCTGCTGGTGCTGCTGCTGGTGGTGGTTCTTCTTCACACCATCTCCATCATCACCATTACGGCATGTCAAGCTTGATAGCAAAGAGGCCGGCACCCAAGAAAGACAGGCACAGCAAGATTCACACTTCTCAGGGGCTGAGGGATAGAAGGGTGAGGCTTTCCATTGAGATTGCACGCAAGTTCTTTGATCTTCAAGACATGTTAGGGTTTGATAAAGCCAGCAACACTCTCGAGTGGCTCTTAACGAAGTCAAAGCGAGCAATTAAGGAGTTAGCTAGAAGCAAGCAGCAAAGTAGCAGTGGCAACAACAATGGTGGTGGTGTTGCCATTAACAATAACAATAACAGCTTCTCTTCTTCCTCTTCTGATGAGGCTGAAGATGATGAAGTTGATTCAGTCATCAACCAACAACAACTCATCACTGATTTTGATGGTATTACTCATGAACAAGGGGTTGTGGATTCAAGGCTAAGAAGGGAACAACAGAAGGAGGAAGAATCAAGGGCAAAGATGAAGGAATCAAGGGAGAAAGCAAGGGCAAGAGCAAGGGAAAGGACTAATAGCAAGATGTGCTATAACAGTAGCAGTGAGCAAGAATTGATGATGATGAAGAAGAAAAGCCCTGCTGCAATAATAGCAATGGAGGAAGATCCTCAAATTATGATGCAGCATCAACAATTGAGGTCACCAATGATTCAACCTCTTGAGGAATCTTCAATGAGATCATCACCAAAGCTGTTTCACCCTCATCATAATAATCTTGCAGCAGCAGCAGCAGGAGGAGGAAGTAATAGTGAAGTCCCAAGAGATGATGATTTCAATGTTATTGAGGAATCCATTGTCATAAGGAGAAAGCTGAAGCAATCTTTGATGTCTTCTTCTTCATCTTCTTCCAATAACCAACACCATCACCATCAAAATCATGTTATCCCTAAAGAAGCAACAAGCTTCAACAACAACAACAGTGACTACCACTGCTTTCCCAATTTATCATCACCGAGTTGGGAAGCTAATGCTGCTGCTGCTGCCGCCACTAATGGCCGCTCCAATGTTTGCACAATATCAAGCATGAATCTATCTACAAGGCTTCAGATCTTTGGAAAGTCTTGGGAAGAGTGCACCAATCCCCACCCATGA 1203 0.4381 MTNLAVADAMFKQEYFTAAAAHAAGAAAGGGSSSHHLHHHHYGMSSLIAKRPAPKKDRHSKIHTSQGLRDRRVRLSIEIARKFFDLQDMLGFDKASNTLEWLLTKSKRAIKELARSKQQSSSGNNNGGGVAINNNNNSFSSSSSDEAEDDEVDSVINQQQLITDFDGITHEQGVVDSRLRREQQKEEESRAKMKESREKARARARERTNSKMCYNSSSEQELMMMKKKSPAAIIAMEEDPQIMMQHQQLRSPMIQPLEESSMRSSPKLFHPHHNNLAAAAAGGGSNSEVPRDDDFNVIEESIVIRRKLKQSLMSSSSSSSNNQHHHHQNHVIPKEATSFNNNNSDYHCFPNLSSPSWEANAAAAAATNGRSNVCTISSMNLSTRLQIFGKSWEECTNPHP 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc3g00038 400 ProSiteProfiles TCP domain profile. 55 113 IPR017887 -
Stsc3g00038 400 MobiDBLite consensus disorder prediction 115 143 - -
Stsc3g00038 400 MobiDBLite consensus disorder prediction 114 209 - -
Stsc3g00038 400 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 33 346 IPR005333 GO:0003700
Stsc3g00038 400 ProSiteProfiles R domain profile. 194 211 IPR017888 -
Stsc3g00038 400 Coils Coil 179 203 - -
Stsc3g00038 400 Pfam TCP family transcription factor 54 213 IPR017887 -
Stsc3g00038 400 MobiDBLite consensus disorder prediction 310 330 - -
Stsc3g00038 400 MobiDBLite consensus disorder prediction 171 208 - -
Stsc3g00038 400 MobiDBLite consensus disorder prediction 310 326 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc3g00038 Stsc-Chr3 251001 252369 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc3g00038 55 215 TCP Transcription Factor Family AT1G67260 43.195 7.54e-30 116
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Stsc3g00038 TCP 1.3e-43 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc3g00038 - - aip:107637396 479.944