Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc3g00006 ATGGATCCAAGAAGGCATGGGAAGCTACCATTTTCTTCATCATCAGATGCAAAAGAGAAAGAGGATGATGATGCTTATTATGGATCTTCTTGGTGCACATCATCTGAAGACACTGACATGTCAGCCATGGTTTCAGCTCTTGCTCAAGTTATGGCAACTTCCAATAATCAGAACCCTATGATGCTGCCACACTCAAACTCATCAAACCCTTTTCCTCTTTCACCTTCTTTGGTAAAAAATGAACCTCTTCAACCTCACCCTCTTCAAGATCAAGAGGGGAGAAATGAGAAGAAGCCACACTACAGAGGAGTGAGACAGAGGCCATGGGGAAAATGGGCAGCAGAAATAAGAGATCCAAAGAAAGCAGCAAGAGTTTGGCTTGGAACCTTTGACACTGCTGAAGATGCTGCCTTAGCTTATGACAAAGCTGCACTCAAATTCAAAGNNNNNNNNNNTCACAAAATTCTTCAACCAAACAACCCTCCTACTCAACAACAACAACATCAAGAACCTGCTGGTTCTGCTGCCATTCATCAACAAAGTAGCCTAATCTTCAGTGGTTCAGCTTCTAATGCTGATCTTGCTACACCCTACTCACCAACATCATCATCATCATTATCCTCTACACATGATCATCAAGTTTTCCCAAACTTGTTTCAGTATGCACAGATTATTTCAAGTGATGAAGCAAATTTCCCTTATTACACTTCAAATCTCTTCAATCAACAACAGCAGCAGCAGCAACAGCAACTGCAACAACCTTTCAATCCATCATCCTATTTCTACAGCCAACAACAACAACAACATGATCATGAAGGAGGACACCATCATCACCCTGATCAGTAG 846 0.4137 MDPRRHGKLPFSSSSDAKEKEDDDAYYGSSWCTSSEDTDMSAMVSALAQVMATSNNQNPMMLPHSNSSNPFPLSPSLVKNEPLQPHPLQDQEGRNEKKPHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFDTAEDAALAYDKAALKFKXXXXHKILQPNNPPTQQQQHQEPAGSAAIHQQSSLIFSGSASNADLATPYSPTSSSSLSSTHDHQVFPNLFQYAQIISSDEANFPYYTSNLFNQQQQQQQQQLQQPFNPSSYFYSQQQQQHDHEGGHHHHPDQ 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc3g00006 281 ProSiteProfiles AP2/ERF domain profile. 100 161 IPR001471 GO:0003700|GO:0006355
Stsc3g00006 281 MobiDBLite consensus disorder prediction 52 75 - -
Stsc3g00006 281 SUPERFAMILY DNA-binding domain 100 148 IPR016177 GO:0003677
Stsc3g00006 281 MobiDBLite consensus disorder prediction 52 99 - -
Stsc3g00006 281 SMART rav1_2 100 163 IPR001471 GO:0003700|GO:0006355
Stsc3g00006 281 PANTHER DNA-BINDING DOMAIN 54 250 IPR044808 GO:0003700|GO:0009873
Stsc3g00006 281 Pfam AP2 domain 99 147 IPR001471 GO:0003700|GO:0006355
Stsc3g00006 281 MobiDBLite consensus disorder prediction 243 268 - -
Stsc3g00006 281 MobiDBLite consensus disorder prediction 157 210 - -
Stsc3g00006 281 MobiDBLite consensus disorder prediction 1 26 - -
Stsc3g00006 281 Gene3D AP2/ERF domain 100 155 IPR036955 GO:0003700|GO:0006355
Stsc3g00006 281 MobiDBLite consensus disorder prediction 152 210 - -
Stsc3g00006 281 MobiDBLite consensus disorder prediction 243 281 - -
Stsc3g00006 281 MobiDBLite consensus disorder prediction 1 38 - -
Stsc3g00006 281 FunFam Ethylene-responsive transcription factor 2 99 153 - -
Stsc3g00006 281 CDD AP2 99 147 IPR001471 GO:0003700|GO:0006355
Stsc3g00006 281 PRINTS Ethylene responsive element binding protein signature 123 139 IPR001471 GO:0003700|GO:0006355
Stsc3g00006 281 PRINTS Ethylene responsive element binding protein signature 101 112 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc3g00006 Stsc-Chr3 59430 63877 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc3g00006 43 240 AP2-EREBP Transcription Factor Family AT5G13330 42.714 3.10e-33 119
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Stsc3g00006 AP2 3.5e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc3g00006 - - gmx:100796624 197.978