Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc3g00004 ATGATGGTTTTGGAAGAACGAGTTCTGTTTAACGGCGAACACGACGGAGCCGTCAACGGAGCGCAGCCAGTTTCCGCGGCCGCAGACGGCGGCGAAGATGGAAAACCGACGGCGAGGCTTCCACGGTGGACGCGCCAGGAGATCCTGGTACTAATTCAAGGCAAAACCGACGCCGAGAGCAGGTTCCGACCTGGTAGGTCCGCCGTAGGTTCGCCGTCGATCGGTTCTCCGGAGCCGAAGTGGGCGCTGGTATCGTCGTACTGCAAGAAGCACGGCGTGAACCGCGAACCGGTTCAGTGCCGGAAGAGGTGGAGCAACCTCGCCGGCGATTACAAGAAGATCAAGGAGTGGGAGTCTAGGGCAAGGGATGAAACGGAGTCGTTTTGGGTTATGAGGAACGACATGAGGAGGGAGAGAAAGTTACCGGGGTATTTTGATAAGGAGGTGTATGATATACTTGATGCTGCGGTTTCTCCGGCGACGGCGGTGGTTCCGGCGAGTTCTGCAACGGCAGTGAAGGTGGCGGAGGAAGGGGAGGGTGGTGGTGATGCTGAGGTTCACATTTATGACAGTAATAGGAGAGTGAGTGGTGGTGGTGGAGGTGAGGATGGGTTATTCTCTGATTCTGAAAGGGACGAGGTTTTTGTTGCTCCTAATAAGAATGTTCCTACACCTGTTATTCCTATCTCAGCAGAGAAGCAGTATCAACCACTCCAAGGGGAAAGCAATGCTCAAGATGCTACTAACGAGAAACAACCGGCTGCAAATCCGGATTCTACACCTCAAGGGGAACGGAAGAGGAAGCGCTTTGCAACTGATTTGGAGGAAGAAACTCTGCAGAGTCAATTAATTGATGTCTTAGAAAGAAATGGCAGGATGCTGCGCGATCAACTTGAAGCTCAGAACGTCAATTTTCAATTGGATCGACAGCAGCAAAAAGACACCGCAAGTAACATTGTTGCTGTGCTTGATAAGCTTGCTGATGCTTTAGGAAGAATTGCGGATAAACTATGA 1014 0.5178 MMVLEERVLFNGEHDGAVNGAQPVSAAADGGEDGKPTARLPRWTRQEILVLIQGKTDAESRFRPGRSAVGSPSIGSPEPKWALVSSYCKKHGVNREPVQCRKRWSNLAGDYKKIKEWESRARDETESFWVMRNDMRRERKLPGYFDKEVYDILDAAVSPATAVVPASSATAVKVAEEGEGGGDAEVHIYDSNRRVSGGGGGEDGLFSDSERDEVFVAPNKNVPTPVIPISAEKQYQPLQGESNAQDATNEKQPAANPDSTPQGERKRKRFATDLEEETLQSQLIDVLERNGRMLRDQLEAQNVNFQLDRQQQKDTASNIVAVLDKLADALGRIADKL 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc3g00004 337 PANTHER TRIHELIX TRANSCRIPTION FACTOR ASR3 23 337 - -
Stsc3g00004 337 Pfam Myb/SANT-like DNA-binding domain 42 131 IPR044822 -
Stsc3g00004 337 MobiDBLite consensus disorder prediction 238 259 - -
Stsc3g00004 337 MobiDBLite consensus disorder prediction 238 268 - -
Stsc3g00004 337 Gene3D - 43 113 - -
Stsc3g00004 337 CDD GT1 41 115 - -
Stsc3g00004 337 ProSiteProfiles Myb-like domain profile. 35 108 IPR001005 -
Stsc3g00004 337 Coils Coil 295 315 - -
Stsc3g00004 337 MobiDBLite consensus disorder prediction 15 38 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc3g00004 Stsc-Chr3 28113 31354 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc3g00004 15 164 Trihelix Transcription Factor Family AT3G25990 24.841 2.17e-06 47.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Stsc3g00004 Myb_DNA-bind_4 3.1e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc3g00004 - - adu:107486470 469.929