Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc3g00003 ATGCAATTTGCAAAGCTAGATGACTCTCCTATGTTCCGGAAGCAGATACAATGCATGGAGGAAAGTGCTGAATCTTTGAGAGAGAGAAGTTTAAAGTTTTACAAAGGATGTAGAAAATATACTGAAGGACTTGGGGAGGCATATGATGGAGACATTGCATTTGCAAGTGCCCTTGAAACTTTTGGTGGTGGGCATAATGATCCCATCAGTGTGGCTTTTGGAGGCCCCGTTATGACCAAATTCACTATAGCCTTACGAGAAATCGGGACATACAAGGAGGTCCTTCGATCACAGGTTGAGCATATGTTAAATGACAGATTGCTCCAGTTTGTCAATATTGATTTGCAAGAAGTCAAGGAAGCACGGAAACGCTTTGACAAGGCTAGCCTTATTTATGACCAGACTCGTGAAAGGTTTCTGTCACTGAGAAAAGGCACAAAAAGTGAAGTAGCTAATGCCCTAGAAGAGGAGCTTCATAATGCAAGATCTACATTTGAGCAAGCTCGGTTTAATCTGGTTACTGCCTTGTCAAATGTTGAAGCAAAGAAGAGGTTTGAATTTTTGGAAGCAGTTAGTGGGACAATGGATGCGCATCTTCGTTACTTCAAACAGGGGTATGAATTGTTGCACCAGATGGAGCCATATATTAACCAGGTCTTGACTTATGCTCAGCAGTCAAGAGAAAGGTCCAACTATGAGCAGGCGGCTCTCAATGAAAGAATGCAAGAATACAAACGGCAGATTGACCGAGAGAGTAGATGGGTCCAAACTATTCGACAGGGTTATCTCTCAAAGCGTTCCTCAAACTTAAGAGGGGATTGGAAAAGGAGGTTTTTTGTTCTTGACAGTCGAGGATTGCTGTATTACTACCGTAAACAAGTCAGCAAGTCATCGGGATCTAGCAGTCAACATTCTGGTCAGCGGAATAGTTCTGAGCTCGGGTCTGGACTTTTAAGTCGATGGCTGTCTTCTCATCACCACGGTGGAGTACATGATGAGAAATCTGTTGCTCATCATACTGTGAACCTGCTTACATCTACAATCAAAGTTGATGCTGACCAATCAGATTTGAGGTTTTGCTTCCGGATCATCTCACCAACAAAGAACTACACTTTGCAGGCAGAGAGTGCACTGGACCAAATGGATTGGATTGAAAAGATCACAGGTGTTATTGCCTCACTGTTGAGTTCTCAGATTCCTGAAAGGTTGTTACCTGCAAGTCCAATGGGAAGTGCTCATAACAGGTCCACAAGTGAGAGTAGTTCTTTTGAAAGTTCAGATTTCGATCACACAGCTATTGAAGAATTTGCAGCAGAGAGAAATCCTGCTGCTTCAAATGTGGACCGCACCTCGAGAAGCTTGCAGCAGCAGCGATCTGGTATTAAAAGTGAGAAGCCTATTGATGTGTTGCGAAAAGTTTGTGGGAATGATAGGTGTGCTGATTGTGGTGCCCCTGAACCTGATTGGGCATCATTAAATCTTGGTGTTCTTGTTTGCATCGAGTGTTCTGGTGTTCATCGAAACCTTGGTGTACACATATCAAAGGTCAGGTCACTTACGTTGGATGTTAAAGTGTGGGAGCCTTCTGTAATAAGTTTATTTCAGTCTCTTGGGAATACTTTTGTCAACTCTGTCTGGGAGGAACTATTGCACTCGAGAAGTGGCTTTCAGGTTGACCTTGTTTCTACAGGGTTAAGCAGGTCTGATAAATCACTGGCACTTTACATCAGCAAACCTTCTCAATCCGAGTCTCTATCTGTTAAGGAAAAGTTCATCCATGCAAAGTATGCAGAGAAGCTTTTTGTTCGCAAACCAAAGGACAGCCAATACCGGCTACTGGTGGCCCAACAGATATGGGAAGCAGTTCGTGCTAATGACAAAAAGACCGTGTACCGATACATTGTTAATTCTGACATTGATGTCAATGCTGCTTATGAACAAATGTGTAGCAGCTCTTTAACCCTTGCTAAAGTGATGCTATTACAAGAGCAGACAAACCATGATCACAGCTCTATAGCAGGAAACACATTGGACTGGTCCTCTGCTAGCTCTTTGAACGCAGGCTCTAAAGAAGGACGTGCCCTTGACAACCTAGATGGGTCTACCCTACTTCATCTTGCTTGTGAAACTGCAGATATTGGCATGCTGGAGCTCCTCCTACAGTATGGTGCAAATGTAAATGCAACCGATTCAAGAGGTCAAACGCCATTGCATCGCTGTATTCTCAAAGGCAAATCTACATTTGCAAGATTACTTCTTTCAAGGGGAGCTGATCCTCAAGCTGTGGATGATGAGGGAAGAACCCCTATCGAGCTCGCTGCGGAGTCAAATGCCGACGACAGACAAGTCCATGCTCCATCAACTGATTCTAATGGATGA 2379 0.4367 MQFAKLDDSPMFRKQIQCMEESAESLRERSLKFYKGCRKYTEGLGEAYDGDIAFASALETFGGGHNDPISVAFGGPVMTKFTIALREIGTYKEVLRSQVEHMLNDRLLQFVNIDLQEVKEARKRFDKASLIYDQTRERFLSLRKGTKSEVANALEEELHNARSTFEQARFNLVTALSNVEAKKRFEFLEAVSGTMDAHLRYFKQGYELLHQMEPYINQVLTYAQQSRERSNYEQAALNERMQEYKRQIDRESRWVQTIRQGYLSKRSSNLRGDWKRRFFVLDSRGLLYYYRKQVSKSSGSSSQHSGQRNSSELGSGLLSRWLSSHHHGGVHDEKSVAHHTVNLLTSTIKVDADQSDLRFCFRIISPTKNYTLQAESALDQMDWIEKITGVIASLLSSQIPERLLPASPMGSAHNRSTSESSSFESSDFDHTAIEEFAAERNPAASNVDRTSRSLQQQRSGIKSEKPIDVLRKVCGNDRCADCGAPEPDWASLNLGVLVCIECSGVHRNLGVHISKVRSLTLDVKVWEPSVISLFQSLGNTFVNSVWEELLHSRSGFQVDLVSTGLSRSDKSLALYISKPSQSESLSVKEKFIHAKYAEKLFVRKPKDSQYRLLVAQQIWEAVRANDKKTVYRYIVNSDIDVNAAYEQMCSSSLTLAKVMLLQEQTNHDHSSIAGNTLDWSSASSLNAGSKEGRALDNLDGSTLLHLACETADIGMLELLLQYGANVNATDSRGQTPLHRCILKGKSTFARLLLSRGADPQAVDDEGRTPIELAAESNADDRQVHAPSTDSNG 792
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc3g00003 792 Pfam BAR domain of APPL family 6 232 IPR004148 GO:0005515|GO:0005737
Stsc3g00003 792 Gene3D Arfaptin homology (AH) domain/BAR domain 4 250 IPR027267 -
Stsc3g00003 792 Pfam Putative GTPase activating protein for Arf 467 604 IPR001164 GO:0005096
Stsc3g00003 792 PANTHER CENTAURIN/ARF 3 786 IPR045258 GO:0005096
Stsc3g00003 792 SMART arf_gap_3 464 609 IPR001164 GO:0005096
Stsc3g00003 792 SUPERFAMILY ArfGap/RecO-like zinc finger 464 604 IPR037278 -
Stsc3g00003 792 Coils Coil 151 171 - -
Stsc3g00003 792 CDD PH_ACAP 259 396 - -
Stsc3g00003 792 ProSiteProfiles ARF GTPase-activating proteins domain profile. 464 609 IPR001164 GO:0005096
Stsc3g00003 792 Gene3D - 609 781 IPR036770 -
Stsc3g00003 792 SMART 5bar 11 218 IPR004148 GO:0005515|GO:0005737
Stsc3g00003 792 CDD BAR_SFC_plant 14 215 IPR035670 -
Stsc3g00003 792 ProSiteProfiles Ankyrin repeat profile. 732 764 IPR002110 GO:0005515
Stsc3g00003 792 FunFam ADP-ribosylation factor GTPase-activating protein AGD3 4 251 - -
Stsc3g00003 792 Gene3D Arf GTPase activating protein 444 608 IPR038508 -
Stsc3g00003 792 MobiDBLite consensus disorder prediction 758 792 - -
Stsc3g00003 792 PRINTS HIV Rev interacting protein signature 476 495 IPR001164 GO:0005096
Stsc3g00003 792 PRINTS HIV Rev interacting protein signature 495 512 IPR001164 GO:0005096
Stsc3g00003 792 PRINTS HIV Rev interacting protein signature 518 539 IPR001164 GO:0005096
Stsc3g00003 792 ProSiteProfiles Ankyrin repeat region circular profile. 699 730 - -
Stsc3g00003 792 ProSiteProfiles Ankyrin repeat profile. 699 731 IPR002110 GO:0005515
Stsc3g00003 792 CDD ArfGap 467 596 - -
Stsc3g00003 792 Pfam Ankyrin repeats (many copies) 719 773 IPR002110 GO:0005515
Stsc3g00003 792 FunFam ADP-ribosylation factor GTPase-activating protein AGD1 446 610 - -
Stsc3g00003 792 SUPERFAMILY Ankyrin repeat 621 778 IPR036770 -
Stsc3g00003 792 SMART ANK_2a 699 728 IPR002110 GO:0005515
Stsc3g00003 792 SMART ANK_2a 732 761 IPR002110 GO:0005515
Stsc3g00003 792 SUPERFAMILY BAR/IMD domain-like 6 279 IPR027267 -
Stsc3g00003 792 Coils Coil 227 247 - -
Stsc3g00003 792 Gene3D - 251 401 IPR011993 -
Stsc3g00003 792 Pfam PH domain 258 391 IPR001849 -
Stsc3g00003 792 ProSiteProfiles Ankyrin repeat region circular profile. 732 764 - -
Stsc3g00003 792 SMART PH_update 257 394 IPR001849 -
Stsc3g00003 792 MobiDBLite consensus disorder prediction 405 424 - -
Stsc3g00003 792 ProSiteProfiles PH domain profile. 256 392 IPR001849 -
Stsc3g00003 792 MobiDBLite consensus disorder prediction 410 424 - -
Stsc3g00003 792 SUPERFAMILY PH domain-like 257 396 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc3g00003 Stsc-Chr3 14126 20623 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc3g00003 476 603 C2H2 Transcription Factor Family AT4G21160 38.760 3.85e-20 90.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc3g00003 K12489 - gmx:100789134 1371.3