Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc3g00001 ATGTATATCATGTCTTCTCTGCTTTGGACCTCCATTGCAATGTGTCTCACTCTTGCACTTGCACTTCCACCTCCACACCCTTCTTCTTCTTCACACCATCCTCTTAGGATTTCTCGCTTACCAGGTCAACCCCTCGTTCAGTTTCAACACTTTTCAGGTTATGTTGCCCTTGATAACACCAAAACCAAAGCACTTTTCTTCTACTTCGTTGAAGCTCAAAACGATGCACCTTCCAAACCCCTTGTTCTTTGGCTCAATGGAGGGCCTGGTTGTTCTTCTATTGGAGTTGGTGCATTCTCTGAAAATGGACCATTTAGGCCTAAAGGAGAAGCCTTGGTGAGGAACCAATTCAGCTGGAACAGAGAAGCAAATATTTTGTACCTGGAAACACCTATTGGAGTTGGATTCTCTTATTCAAAAGATACTTCCTCTTATGTGGGTGTAAATGACAAGATCACAGCCAGGGATAACTTAATATTCTTGAAAAACTGGTTTGTAAAGTTCCCAGACTACAGAAACAGAAGTTTGTTCATAGTAGGAGAAAGCTATGCTGGCCACTATGTTCCTCAACTTGCTGAGCTTATGCTAGAATTCAACAAAAAAGAGAAGTTGTTCAACTTAAAAGGAATTGCACTTGGCAACCCAGTTCTTGAATTTGAAACAGATTTCAATTCAAGAGCTGAGTTCTTCTGGTCACATGGACTAATCTCAGATGTAACATTCCAAATGTTCACATCTGTGTGTAACTATTCAAGATATGTGAGGGAGTATTATAGTGGTGCTGTTTCTCCTTTGTGTTCAAGGGTTATGAGCCAAGTTAGCACAGAAACAAGTAGATTCGTCGACAAGTATGATGTTACACTTGATGTTTGTATATCTTCAGTGTTTTCACAAACCAAGGTCCTCAATCCTCAGCAAGTTACCGAAACCATAGACGTGTGCGTTGAAGACGAAACGGTGAATTATCTGAACCGGAAGGATGTTCAGTCGGCTTTGCATGCGCGATTGGTTGGAGTCCAAAAATGGTCTGCTTGCAGCAATGTGCTAGATTACGAGCTGCGCAATTTGGAGATACCGACAATCGCGATTGTCGGTAAACTGGTCAAGGCAGGAATACCAGTGTTGGTCTACAGTGGTGATCAGGATTCAGTTATACCATTGACTGGAAGTAGAAAATTAGTGCACCAATTGGCAAAACAGCTGAAGCTGAGGACTACTGTGCCCTACAGGGTCTGGTTTGAGGGGAAGCAGGTGGGTGGGTGGACTCAAGTTTATGGTAATATCCTTTCATTTGCCACCATTAGAGGAGCATCACATGAAGCTCCATTTTCACAGCCTGAGAGATCACTTGTGCTGTTTAAGTCCTTCTTAGAAGGTCGACCTCTACCTGAAGAATTTTAG 1401 0.4254 MYIMSSLLWTSIAMCLTLALALPPPHPSSSSHHPLRISRLPGQPLVQFQHFSGYVALDNTKTKALFFYFVEAQNDAPSKPLVLWLNGGPGCSSIGVGAFSENGPFRPKGEALVRNQFSWNREANILYLETPIGVGFSYSKDTSSYVGVNDKITARDNLIFLKNWFVKFPDYRNRSLFIVGESYAGHYVPQLAELMLEFNKKEKLFNLKGIALGNPVLEFETDFNSRAEFFWSHGLISDVTFQMFTSVCNYSRYVREYYSGAVSPLCSRVMSQVSTETSRFVDKYDVTLDVCISSVFSQTKVLNPQQVTETIDVCVEDETVNYLNRKDVQSALHARLVGVQKWSACSNVLDYELRNLEIPTIAIVGKLVKAGIPVLVYSGDQDSVIPLTGSRKLVHQLAKQLKLRTTVPYRVWFEGKQVGGWTQVYGNILSFATIRGASHEAPFSQPERSLVLFKSFLEGRPLPEEF 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc3g00001 466 FunFam Carboxypeptidase 360 459 - -
Stsc3g00001 466 Gene3D alpha/beta hydrolase 33 293 IPR029058 -
Stsc3g00001 466 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 38 446 IPR001563 GO:0004185|GO:0006508
Stsc3g00001 466 PRINTS Carboxypeptidase C serine protease (S10) family signature 164 189 IPR001563 GO:0004185|GO:0006508
Stsc3g00001 466 PRINTS Carboxypeptidase C serine protease (S10) family signature 429 442 IPR001563 GO:0004185|GO:0006508
Stsc3g00001 466 PRINTS Carboxypeptidase C serine protease (S10) family signature 115 127 IPR001563 GO:0004185|GO:0006508
Stsc3g00001 466 PRINTS Carboxypeptidase C serine protease (S10) family signature 128 138 IPR001563 GO:0004185|GO:0006508
Stsc3g00001 466 ProSitePatterns Serine carboxypeptidases, histidine active site. 429 446 IPR033124 GO:0004185
Stsc3g00001 466 SUPERFAMILY alpha/beta-Hydrolases 40 463 IPR029058 -
Stsc3g00001 466 Gene3D - 314 350 - -
Stsc3g00001 466 FunFam Carboxypeptidase 30 463 - -
Stsc3g00001 466 ProSitePatterns Serine carboxypeptidases, serine active site. 178 185 IPR018202 GO:0004185
Stsc3g00001 466 Gene3D - 361 459 - -
Stsc3g00001 466 Pfam Serine carboxypeptidase 42 459 IPR001563 GO:0004185|GO:0006508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc3g00001 Stsc-Chr3 4093 7096 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc3g00001 322 462 Calmodulin-binding Proteins AT2G22960 27.660 2.21e-14 69.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc3g00001 K16297 - gmx:100805130 801.201