Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc39g00029 ATGGATTTGGATGATTTCCGATCCATACTGGACACCGCCGGCGTTGACCTTTGGGCTTTCTTCCATGCTGCTATCGATGTCGCTTCCTCCGATAACCCCGCCGAATTGAAGCGCCGCCGTGACGGAATCGTCGAACGCCTTTACGCCGCCACTGCCACGCCTCCCCGCTGTTTCAATTGCGAAGCACACAATAAACAAAACAAATCGTCAGAGGAGGATTTGGATCCTTTTGGAGGATTATTCGATGACGAGCAGAAGAAGATTCTAGAGATTAAACACCAGCTTGAAGACCCTCACCAGTCGGAAGATGATTTGGCAGAGTTGCTACAGAATCTGGCGGATATGGATGTTACGTTCCAGGCGTTAGAGGAAACTGACATTGGGAGGAATGTTAATCGGTTAAGGAAGCATTCCTCCAGTGAAGTTCGCAGATTGGTGAAGCTTCTTGTCAGGAAGTGGAAGGAAATTGTAGATGATTGGGTGAAGTTGAAGGCACCTGGAGAATCTGCTACTACTGTCATTGGTGATGATGAAGATTCGCCGCCTCAGCAGAGGAATCAGCGAAATGGGCATCATCATCAGATTCCTGATTTTGCATGCTCGCCAAATCCAGAGTATGGAAATTTTGAGTCAGAGGCCAACAATTCTTCTGAAGCAGAACCTGAACCAGAACCAAAACCAAAACCAAAACCAATTCCTCGCAAAGAACCTCTGCCAAAACCAGCTCAAAAATCACCATCACCATTACCATCAGTTCCAACTCCTCCTCTTCAGAACAGACAAAAAGATAGCAATTTTGACGCGGAGAGACTCGCTTCAGCAAGAAAACGGCTTCAAGAGAATTACAAAGAGGCCGCAAATGCGAAAAAGCAAAGAACGATACAGGTGATGGACTTGCATGAGTTGCCAAAACCAAAAGCCAAGAATGCTTTCTTTGGTAAGAACAAAGGTGGCGGCATGGGTTCTCAGGGAAGGAGATGGTGA 984 0.4685 MDLDDFRSILDTAGVDLWAFFHAAIDVASSDNPAELKRRRDGIVERLYAATATPPRCFNCEAHNKQNKSSEEDLDPFGGLFDDEQKKILEIKHQLEDPHQSEDDLAELLQNLADMDVTFQALEETDIGRNVNRLRKHSSSEVRRLVKLLVRKWKEIVDDWVKLKAPGESATTVIGDDEDSPPQQRNQRNGHHHQIPDFACSPNPEYGNFESEANNSSEAEPEPEPKPKPKPIPRKEPLPKPAQKSPSPLPSVPTPPLQNRQKDSNFDAERLASARKRLQENYKEAANAKKQRTIQVMDLHELPKPKAKNAFFGKNKGGGMGSQGRRW 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc39g00029 327 Coils Coil 105 125 - -
Stsc39g00029 327 MobiDBLite consensus disorder prediction 305 327 - -
Stsc39g00029 327 CDD TFIIS_I 85 158 - -
Stsc39g00029 327 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 82 171 IPR035441 -
Stsc39g00029 327 SMART TFS2_5 88 159 IPR003617 GO:0005634
Stsc39g00029 327 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 26C-RELATED 1 326 IPR044790 -
Stsc39g00029 327 MobiDBLite consensus disorder prediction 238 255 - -
Stsc39g00029 327 MobiDBLite consensus disorder prediction 219 237 - -
Stsc39g00029 327 ProSiteProfiles TFIIS N-terminal domain profile. 83 160 IPR017923 -
Stsc39g00029 327 MobiDBLite consensus disorder prediction 171 273 - -
Stsc39g00029 327 Pfam TFIIS helical bundle-like domain 108 157 IPR017923 -
Stsc39g00029 327 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 86 167 IPR035441 -
Stsc39g00029 327 Coils Coil 268 295 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc39g00029 Stsc-Chr39 183946 186548 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR IWS1 Stsc39g00029 Med26 1e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc39g00029 - - aip:107630962 474.552