Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc39g00026 ATGGCATCATCAAATGCCTTTGGCTGGGCTGCAACAGACTCCTCTGGCCATCTCTCTCCCTTCCATTTCACAAGAAGGGAAAATGAAGCTGATGATGTCACTCTCAAAATCCTCTACTGCGGGGTTTGCCATTCCGATCTCCACACAGTCAAGAACGACTGGGGTTTCACTACTTACCCTGTTGTCCCCGGGCATGAAATTGCTGGAATTGTGACAAAAGTTGGAAGTAATGTGACAAAATTTAAGGAAGGTGATAGAGTTGGTGTTGGTGTAATAGTGGACTCATGTAAGGAATGCGAGTCTTGCCAGCAGGATCTGGAGAGTTACTGTCCTAAACCTGTGTTTACCTATAACGCTCCATATAAAGGGACCCGAACCCAGGGCGGCTACTCCAATTTTGTGGTTGTACACCAGCGCTATGTGCTTCAATTTCCCGGCAACCTACCCCTTGATGCCGGTGCCCCGCTGCTATGTGCTGGGATCACTGTGTACAGTCCAATGAAGTATTATGGGATGACAGAGCCCGGCAAGCATTTGGGAGTGGCCGGCCTCGGCGGCTTAGGCCACGTTGCCATCAAATTTGGCAAAGCATTTGGTCTCAAAGTTACTGTCATTAGTAGCTCTCCCAGCAAGGAAGCTGAAGCCATTGACCTTCTCAGGGCTGATTCTTTCCTTCTTTCCTCTGACCCTGAAAAGATGAAGGCCGCTACCGGAACCATGGATTATATAATCGACACGATTTCTGCTGTTCATTCGCTGGTTTCCTTGTTTGGTCTGCTGAAGTTGAATGGAAAGCTTGTCACCGTGGGGCTGCCTAGCAAGCCTCTTCAGCTGCCTATCTTTCCGTTGGTCATGGGAAGGAAGCTTATAGGGGGAAGCAACTTTGGAGGGCTGAAGGAGACTCAGGAGATGCTTGATTTCTGTGGAAAGCATAACATAACTGCAAATATTGAGTTGATTAAGATGGATGAGATCAACACTGCTATGGAAAGGCTCAGCAAAGCTGATGTTAAGTATCGCTTTGTCATTGATGTTGCCAACTCCTTATCCTCCAGTAACATTTAG 1065 0.4761 MASSNAFGWAATDSSGHLSPFHFTRRENEADDVTLKILYCGVCHSDLHTVKNDWGFTTYPVVPGHEIAGIVTKVGSNVTKFKEGDRVGVGVIVDSCKECESCQQDLESYCPKPVFTYNAPYKGTRTQGGYSNFVVVHQRYVLQFPGNLPLDAGAPLLCAGITVYSPMKYYGMTEPGKHLGVAGLGGLGHVAIKFGKAFGLKVTVISSSPSKEAEAIDLLRADSFLLSSDPEKMKAATGTMDYIIDTISAVHSLVSLFGLLKLNGKLVTVGLPSKPLQLPIFPLVMGRKLIGGSNFGGLKETQEMLDFCGKHNITANIELIKMDEINTAMERLSKADVKYRFVIDVANSLSSSNI 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc39g00026 354 SUPERFAMILY GroES-like 12 177 IPR011032 -
Stsc39g00026 354 Gene3D - 159 315 - -
Stsc39g00026 354 FunFam Putative cinnamyl alcohol dehydrogenase 6 316 345 - -
Stsc39g00026 354 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 148 313 IPR036291 -
Stsc39g00026 354 SMART PKS_ER_names_mod 16 343 IPR020843 GO:0016491
Stsc39g00026 354 FunFam Cinnamyl alcohol dehydrogenase 159 315 - -
Stsc39g00026 354 Gene3D - 9 345 - -
Stsc39g00026 354 Pfam Zinc-binding dehydrogenase 186 307 IPR013149 -
Stsc39g00026 354 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 64 78 IPR002328 GO:0008270|GO:0016491
Stsc39g00026 354 FunFam probable cinnamyl alcohol dehydrogenase 9 167 - -
Stsc39g00026 354 PANTHER ALDEHYDE REDUCTASE 4 348 IPR047109 GO:0016616
Stsc39g00026 354 Pfam Alcohol dehydrogenase GroES-like domain 31 143 IPR013154 -
Stsc39g00026 354 CDD CAD1 7 344 IPR047109 GO:0016616
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc39g00026 Stsc-Chr39 148595 152057 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc39g00026 4 349 Monolignol Biosynthesis Gene Families AT2G21890 71.552 0.0 510
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc39g00026 K00083 - gmx:100819684 604.749