Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc39g00017 ATGGACTTCGACGAGTACGAATACTTGGAGAAGACGGTGGAGGACCACGACGACAAAGACTCCTCCAAGCCCAAGAAGAAGGACTCCGCCGACAAAACAGATAGGTCTTACCGCAAGCGCGACGTCGACGACGATCTCGACGCCGCCGATGACAAGCGCACCAAGCGCTCCAGGCACGACGACGACGACACCACTTCCTCCAAGAAGGACCGCGACGACCGTGACCGTGACCGTGACCGCGACCGCGAACGTTCCAGCCGCGACAGGGAGCGCCACCGCAGCGAGAGGGAGAAGGATAGGGATAAGGACGGGGAGAGGAGCAGCAGGGAGAAAGAGAAGGAGAGGGATCGGGATAAGGACAGAGAGAGGAGGGATAGAGATAGAGACAGAGATAGAGACAGGGACAAGGAGAGGGACAGAAGAGATAGGGAGAGAGAGAAGGAACGCGAGAGAAGGGAGAGGGAGAGGGAGAAAGAGAGAGAGGAGAGAGAGAGATCCAGGAGGAGCAGGAGTCGTTCCGAGAGAGAGAGAGACAGAGAAAGAGAACCAGATTTCGAATCTCGCGATGGCCGGAGGTTTAGGGATAAAAAAGAGGCTGCTGAGCCTGAAGCAGACCCAGAAAGGGATCAGAGAACTGTTTTTGCCTATCAGATGCCTTTAAAAGCAACAGAGAGAGATGTATACGAGTTCTTCTCAAAAGCTGGCAAGGTTAGGGATGTTCGTCTGATCATGGATAGAAACTCAAGACGTTCTAAAGGAGTTGGGTACATTGAATTTTATGATGCGATGTCAGTGCCAATGGCAATTGCTCTTTCTGGCCAGCTGCTTCTTGGTCAACCTGTAATGGTGAAACCTTCTGAGGCTGAAAAGAACCTTGTTCAATCTAATGCTTCCACTGGAGCTGCTGGCGTAGCAGGACCATATGGTGCCATGGACAGAAAGCTGTATGTGGGCAACCTTCATTTCAACATGACCGAGAGTCAGCTGCGAGAGATTTTCGAACCATTTGGACCGGTGGAGGTTGTACAACTGCCTCTTGACTTGGAGACAGGACACTGCAAGGGATTTGGGTTTGTTCAATTTGCCCATCTTGAACATGCCAAGGCAGCCCAGAATTTAAACGGAAAGTTGGAGATTGCTGGCAGGACTATCAAGGTTTCTTCTGTAACTGATCATGTTGGGAACCAAGATACAACTGCAAAATCTGCTGATCTTGATGATGATGAAGGTGGATTGGCTTTAAATGCACAATCAAGAGCATTGCTTATGCAGAAGTTGGCAGACCGCCATGGCCTTCCTGGAAGCAATGGGGTGCCTGCTGTGAACGGGGCTGTTCCTATTCAGCCGACCATGGGTTTGCCTATTGGTAATCCAGGTATAATACCTGCTCCTGCTCTCCCAACTCAAATTTTGCCTACTCCAGTGGCAGAACCAGTAGGGAACCCCAGCGAGTGTTTGCTGCTGAAGAATATGTTTGATCCTAGCACCGAGACTGAGCCAGATTTTGATATTGACATTAAAGAGGATGTAGAAGAAGAATGTTCTAAATATGGCCGGGTGAAGCATATTTATGTTGATAAAAGAAGTGCGGGTTTTGTATATTTGCGATTTGAAACGGTGGAGGCAGCAAGCGCTGCACAACGAGCAATGCACATGAGATGGTTTGCACGCAGATTGATTTCAGCTGTGTTCATGCAACCTCAGGTCTACGAAGCCAAGTTTAAAGGAGAAGACTGA 1737 0.4968 MDFDEYEYLEKTVEDHDDKDSSKPKKKDSADKTDRSYRKRDVDDDLDAADDKRTKRSRHDDDDTTSSKKDRDDRDRDRDRDRERSSRDRERHRSEREKDRDKDGERSSREKEKERDRDKDRERRDRDRDRDRDRDKERDRRDREREKERERREREREKEREERERSRRSRSRSERERDREREPDFESRDGRRFRDKKEAAEPEADPERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDAMSVPMAIALSGQLLLGQPVMVKPSEAEKNLVQSNASTGAAGVAGPYGAMDRKLYVGNLHFNMTESQLREIFEPFGPVEVVQLPLDLETGHCKGFGFVQFAHLEHAKAAQNLNGKLEIAGRTIKVSSVTDHVGNQDTTAKSADLDDDEGGLALNAQSRALLMQKLADRHGLPGSNGVPAVNGAVPIQPTMGLPIGNPGIIPAPALPTQILPTPVAEPVGNPSECLLLKNMFDPSTETEPDFDIDIKEDVEEECSKYGRVKHIYVDKRSAGFVYLRFETVEAASAAQRAMHMRWFARRLISAVFMQPQVYEAKFKGED 578
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc39g00017 578 CDD RRM2_RBM23_RBM39 315 392 - -
Stsc39g00017 578 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 313 391 IPR000504 GO:0003723
Stsc39g00017 578 MobiDBLite consensus disorder prediction 9 210 - -
Stsc39g00017 578 NCBIfam splicing factor, CC1-like family 96 574 IPR006509 GO:0003723|GO:0005634|GO:0006397
Stsc39g00017 578 Coils Coil 138 176 - -
Stsc39g00017 578 SUPERFAMILY RNA-binding domain, RBD 204 292 IPR035979 GO:0003676
Stsc39g00017 578 CDD RRM3_RBM39_like 483 565 - -
Stsc39g00017 578 Gene3D - 480 577 IPR012677 -
Stsc39g00017 578 MobiDBLite consensus disorder prediction 1 211 - -
Stsc39g00017 578 Gene3D - 204 298 IPR012677 -
Stsc39g00017 578 SUPERFAMILY RNA-binding domain, RBD 313 390 IPR035979 GO:0003676
Stsc39g00017 578 FunFam Splicing factor CC1-like 297 402 - -
Stsc39g00017 578 CDD RRM1_RBM39_like 212 284 - -
Stsc39g00017 578 PANTHER SPLICING FACTOR (PAD-1), PUTATIVE (AFU_ORTHOLOGUE AFUA_1G15810)-RELATED 1 574 IPR006509 GO:0003723|GO:0005634|GO:0006397
Stsc39g00017 578 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 507 560 IPR000504 GO:0003723
Stsc39g00017 578 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 218 280 IPR000504 GO:0003723
Stsc39g00017 578 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 315 385 IPR000504 GO:0003723
Stsc39g00017 578 FunFam Splicing factor, CC1-like protein 479 578 - -
Stsc39g00017 578 SUPERFAMILY RNA-binding domain, RBD 481 566 IPR035979 GO:0003676
Stsc39g00017 578 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 211 288 IPR000504 GO:0003723
Stsc39g00017 578 FunFam Splicing factor CC1-like 134 296 - -
Stsc39g00017 578 SMART rrm1_1 485 562 IPR000504 GO:0003723
Stsc39g00017 578 SMART rrm1_1 314 387 IPR000504 GO:0003723
Stsc39g00017 578 SMART rrm1_1 212 284 IPR000504 GO:0003723
Stsc39g00017 578 Gene3D - 309 405 IPR012677 -
Stsc39g00017 578 Pfam linker between RRM2 and RRM3 domains in RBM39 protein 406 502 IPR029123 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc39g00017 Stsc-Chr39 91268 96766 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc39g00017 293 386 Eukaryotic Initiation Factors Gene Family AT4G34110 36.842 8.33e-08 53.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc39g00017 K13091 - gmx:100802446 678.707