Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc39g00015 ATGCCATCAATGATGATGTTCCCCGGTCTGAATAGGGAGAAGGAGATGTCTGCTATGGTTGAAGCTTTGACTCATGTTGTATGTGGAGAAATACCTGCTGATCATGATCTTGCTGTGTCTGAAACACCATCTACGTCCTCTTCATCTTATGGGGCCAATTCTAATCTCAAAAGAAGTAGAGAAGATGATATACATACACATACACATACACCCTTTCTTGCTTCATCCTCTGCTGATATTCCACCAAAAGCAGAGGCTGCAATGAAGGGAAAAAGAAAGGAAATGGGAGATGAAGCAGTAGTGTACGAATACAGAACGGATCTAAAGAACAAGAATGATGATGAGGAGATGAAGAAGAAGAAGAAATACAGAGGAGTGAGGCAGAGGCCATGGGGAAAGTGGGCTGCAGAGATAAGAGATCCATTCAAAGCAACCAGAGTGTGGTTAGGAACCTTCATTACTGCTGAGGCTGCCGCCATTGCTTACGACCAAGCCGCTCTCCGTTTCAGAGGCAACAAAGCCAAACTCAACTTCCCTGAAAATGTTACGGTCAAGCAACAACCACCACCACCACCAACAACAACAACAACCTCTACTTTCACCATTTCCCATACTACTACGACTTCTTCTTCTGCTGCATATGTGCCCCTTCCACCAGTATATACTACTGTGGAGGCTTCACCATCCAGCTTTTATGGCTTCTCTTCAGAGTTTTCAGAGTTCCCTATCAGTTTATATGATCAGATGATTGCTTCTCATATTCAAGCTTCTTCGCCAGCGGCCTCGAGTTCTTCTGCTTCTTCAGTGTTTGCTTGCTCTGCAACTTCTCCACCACAGCCACCTACAATTCCTTCTGTTTATTCTGCTAAGGTGCCGCCATGGTCTTCTTCTGCTTATACATCTTCTCCTTCTTGA 915 0.4459 MPSMMMFPGLNREKEMSAMVEALTHVVCGEIPADHDLAVSETPSTSSSSYGANSNLKRSREDDIHTHTHTPFLASSSADIPPKAEAAMKGKRKEMGDEAVVYEYRTDLKNKNDDEEMKKKKKYRGVRQRPWGKWAAEIRDPFKATRVWLGTFITAEAAAIAYDQAALRFRGNKAKLNFPENVTVKQQPPPPPTTTTTSTFTISHTTTTSSSAAYVPLPPVYTTVEASPSSFYGFSSEFSEFPISLYDQMIASHIQASSPAASSSSASSVFACSATSPPQPPTIPSVYSAKVPPWSSSAYTSSPS 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc39g00015 304 SMART rav1_2 122 185 IPR001471 GO:0003700|GO:0006355
Stsc39g00015 304 FunFam Ethylene-responsive transcription factor 2 121 180 - -
Stsc39g00015 304 Pfam AP2 domain 122 171 IPR001471 GO:0003700|GO:0006355
Stsc39g00015 304 MobiDBLite consensus disorder prediction 70 92 - -
Stsc39g00015 304 PRINTS Ethylene responsive element binding protein signature 161 181 IPR001471 GO:0003700|GO:0006355
Stsc39g00015 304 PRINTS Ethylene responsive element binding protein signature 123 134 IPR001471 GO:0003700|GO:0006355
Stsc39g00015 304 ProSiteProfiles AP2/ERF domain profile. 122 179 IPR001471 GO:0003700|GO:0006355
Stsc39g00015 304 Gene3D AP2/ERF domain 121 181 IPR036955 GO:0003700|GO:0006355
Stsc39g00015 304 MobiDBLite consensus disorder prediction 289 304 - -
Stsc39g00015 304 MobiDBLite consensus disorder prediction 270 304 - -
Stsc39g00015 304 SUPERFAMILY DNA-binding domain 122 180 IPR016177 GO:0003677
Stsc39g00015 304 CDD AP2 123 181 IPR001471 GO:0003700|GO:0006355
Stsc39g00015 304 PANTHER DNA-BINDING DOMAIN 70 252 IPR044808 GO:0003700|GO:0009873
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc39g00015 Stsc-Chr39 68133 69829 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc39g00015 114 204 AP2-EREBP Transcription Factor Family AT5G13330 65.934 6.68e-34 121
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Stsc39g00015 AP2 1.1e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc39g00015 - - adu:107480341 303.908