Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc39g00008 ATGGCTTCATGTGAGGATAGTGGTAACAACATGAACGAAGGAGCTTCGGATATTAATCCTAGTCATGGCTCATCACCCATCAATGATAGCAATGGCAAATGCAACTGCATGAAAAGTCAATGTCTGAAGCTCTACTGTCAATGCCTTAGTGCAGGGAATTTTTGCAACGATAATTGTTCATGCAAAAATTGCTTGAATAAAGAAGCGAATAAGGATAGAGTGAAGCAGATAAAGAAGGAAAAACAATCGCGTGATCCGCGCGCGTTCGAACCCAAGGTTATTGTTGATGAAATGTCAAGAAACAGAAAAGGTTGCATTTGCAGAAAGTCGGGGTGCATGAAAAAGTATTGTAGTTGCTTCGGTTTTGAAGTCGGTTGCTCTTGTCATTGCCAATGTCAGAATTGTACGAATCAGTATGGAGTCAAAGGCTCCTCTTCTAGTGCAAAGGAACAAGAACGTGTTAATGATTCTAATAATGGTAGCAAGAACGTGGAAACCATGGATAATGGATCATCTTCTCAATCTCATCATCCACCTGTCTATGACAATTCCCCAAATCAGCTTTCTGAAAATTCAGATGCTAGAGCGGATGATGAATTGGACAACAGCAATGTGAATAATATCCCTATGCCAATGCCATCAAATCAAGTTGCTTCTCCTGATTATAATTTTGCTGTTCATCAGAACCATGTTGCTGCACCTTATTATTATCGGCCTCTAACCCCAGTGCAGATTCAGAGCAGCAGAAACAACTTTACTGAGCAGCAGAGTACTGACTTGTTTGGGGATCCCGATTGGCATGGACAATCATCTTTTCTGAGGACTAATCCTCCCTTCTATTATGATAACAATGTTGCTGAGCCCTCATCAATTCCAAGGATTCAGAGTAGTCAGCAGTATCAACCTCATCAAAGTCATGGTTTTCATCAACAGGTAGAAGCATCGTTTGGAGCAATGACTCGCCAACATCCATTCCTGAGGAGTTCACAACAGCCAAATAATGGTGATGCAACAAATATGCAATTGCGTCTTCATCCTCACCTTCATGGCCGTTGGCCATCTCCTCCTCCTATTGATGATTGA 1083 0.4164 MASCEDSGNNMNEGASDINPSHGSSPINDSNGKCNCMKSQCLKLYCQCLSAGNFCNDNCSCKNCLNKEANKDRVKQIKKEKQSRDPRAFEPKVIVDEMSRNRKGCICRKSGCMKKYCSCFGFEVGCSCHCQCQNCTNQYGVKGSSSSAKEQERVNDSNNGSKNVETMDNGSSSQSHHPPVYDNSPNQLSENSDARADDELDNSNVNNIPMPMPSNQVASPDYNFAVHQNHVAAPYYYRPLTPVQIQSSRNNFTEQQSTDLFGDPDWHGQSSFLRTNPPFYYDNNVAEPSSIPRIQSSQQYQPHQSHGFHQQVEASFGAMTRQHPFLRSSQQPNNGDATNMQLRLHPHLHGRWPSPPPIDD 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc39g00008 360 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 2 30 311 IPR044522 GO:0003700
Stsc39g00008 360 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 103 138 IPR005172 -
Stsc39g00008 360 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 33 68 IPR005172 -
Stsc39g00008 360 MobiDBLite consensus disorder prediction 146 216 - -
Stsc39g00008 360 ProSiteProfiles CRC domain profile. 30 140 IPR005172 -
Stsc39g00008 360 SMART CXC_2 29 70 IPR033467 -
Stsc39g00008 360 SMART CXC_2 100 141 IPR033467 -
Stsc39g00008 360 MobiDBLite consensus disorder prediction 201 216 - -
Stsc39g00008 360 MobiDBLite consensus disorder prediction 146 191 - -
Stsc39g00008 360 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc39g00008 Stsc-Chr39 35013 36292 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc39g00008 33 165 CPP Transcription Factor Family AT3G22760 41.892 3.09e-33 127
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CPP Stsc39g00008 TCR 1.2e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc39g00008 - K21776 ahf:112771246 203.756