Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc39g00007 ATGGCTTCTTGTGAGGATAGTGATAACAACATGAATGAAGGAGCTTCGGATTCTAATCCTAATCCTAGTCATGGTACATCATCTATCAATGATAATGATAGCAACAATGTCAATGTCAATGGCAAATGCAACTGCATTAAAAGTCAATGTGTAAAGCTCTACTGCCAATGCCTTAGTGCTGGGAATTTTTGCAACGATAACTGTTCATGCAAAAATTGCTTAAATAAGGAAGCGAATAAGGATAGAGTGAAGCAGATAAAGAAGGAAATACAATCGCGTGATCCACACGCGTTTGAACCCAAGGTTATTGTTGACCAAGTGGAAAGAAACAGAAAAGGTTGCATTTGCAGAAAGTCAAAGTGCAAGACTGGGTATTGTAGTTGTTTCAGTTTTAAAGTTGGTTGCTATCCTCATTGCCAATGTCAGAATTGCATGAATACGTATGGAGTCAAAAGCTCCTCTTCTGGCTCAAAGGAACAAGAACATGTTAACGATTCTAATAATGGCAGCAAGAACATGGAAATCATGGATAATGGTGGATCATCTTCTCAGTCTAATCATCCACCTGTCTATGACAATTCCGCAAATCAGCTTTCTGAAAATCCTGATGCTAGAGCGGATGATGAATTGGGCAACAGCAATGTGAATAATGTCCCTATGCCAATGCCATCAAATCAAGTTGCTTCTCCTTATTATGATTTTGCTGTTCATCAGGACCATGTTGATGCACCTTATTATTATCAGCCTCTAACCACAGTGCAGATTCAGAGCAGCAGAAACATCTTTACTGAGCAGCAGAGTACTAATTTGTTTGGAGATCCCAATTGGCAGGGACAATCATCTTTTCTGAGGACTAATCCTCCCTTCTATTATGATAACAATGTTGCTGAGCCCTCATCAGTTCCAAGGATTCAGAGTAGTCAGCAGTATCAACCTAATCAGAGTCATGGTTTTCATCAACAGGTAGAAGCATCGTTAGGTAGAATGGCTCTCCAACATTCATTCCTGAGGAGTTCACAACAGCCAAATAATGGTGATGCAACAAACATGCAATTGCATCTTCATCCTCACCTTCATGGCCGTTGGCCATCTCCTCCTCCTATTGATGATTATGAAGAGAACGATTGA 1128 0.4016 MASCEDSDNNMNEGASDSNPNPSHGTSSINDNDSNNVNVNGKCNCIKSQCVKLYCQCLSAGNFCNDNCSCKNCLNKEANKDRVKQIKKEIQSRDPHAFEPKVIVDQVERNRKGCICRKSKCKTGYCSCFSFKVGCYPHCQCQNCMNTYGVKSSSSGSKEQEHVNDSNNGSKNMEIMDNGGSSSQSNHPPVYDNSANQLSENPDARADDELGNSNVNNVPMPMPSNQVASPYYDFAVHQDHVDAPYYYQPLTTVQIQSSRNIFTEQQSTNLFGDPNWQGQSSFLRTNPPFYYDNNVAEPSSVPRIQSSQQYQPNQSHGFHQQVEASLGRMALQHSFLRSSQQPNNGDATNMQLHLHPHLHGRWPSPPPIDDYEEND 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc39g00007 375 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 2 42 302 IPR044522 GO:0003700
Stsc39g00007 375 ProSiteProfiles CRC domain profile. 39 149 IPR005172 -
Stsc39g00007 375 MobiDBLite consensus disorder prediction 1 33 - -
Stsc39g00007 375 MobiDBLite consensus disorder prediction 153 224 - -
Stsc39g00007 375 MobiDBLite consensus disorder prediction 210 224 - -
Stsc39g00007 375 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 42 77 IPR005172 -
Stsc39g00007 375 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 112 147 IPR005172 -
Stsc39g00007 375 SMART CXC_2 38 79 IPR033467 -
Stsc39g00007 375 SMART CXC_2 109 150 IPR033467 -
Stsc39g00007 375 MobiDBLite consensus disorder prediction 356 375 - -
Stsc39g00007 375 MobiDBLite consensus disorder prediction 153 201 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc39g00007 Stsc-Chr39 30556 31947 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc39g00007 42 174 CPP Transcription Factor Family AT3G22760 39.865 9.31e-31 120
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CPP Stsc39g00007 TCR 1.4e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc39g00007 - K21776 ahf:112771246 180.259