Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc39g00006 ATGGCGAGTAGCAGTGGCAACATGAACGAAGAAGAAGGAGCTTCGGATAATAATCATGGAGATCTCAACAAGGAAAATAATCCATCATCATCATCCATCAATGATGGCAATTGCAGATGCACCTGCAAAAAGAGTAAATGCGTCAAGTTCTACTGCAGATGCTTTAACTCTGGAAATTTTTGCAACGATTCTTGTTCGTGCAAAAATTGCTTGAATAATGAAGAGAATAAGGATGCTGTGGAAGAGATAAAGAAGAACATACAGTTGCGTGATCCAGAAGCGTTTGAATCCAAGAATTTAGCAAGAACCCGAAACGGTTGCCATTGCAGGAAGTCAGAGTGCACGCTTCAATATTGTGTTTGCAAACGTAATGGAGTCGGTTGCACTCTTAACTGTCTTTGTGAGGGTTGCAAGAATGAGTATGGAATCAACCCTAATCCTAATCATAACAATGGCAGCAAGAACGTGGAAACCATAATGGATAATGAATCATCATCTGGTTCATCTCAATCTTATCATCCAGCTGTCCACGCCAATTCCTCAATTCAGCTTCCTGATGATGAATTGGGCAACAGCAACAATGTGAATAATAATAATATCCATATGCCAATGCCTACAAATCCAGTCGATTCTCCTTATTATAATTTTCTTGTTCATCAAAACCATGTTGCTGCACCTTATTATGATCCGCTTCTAACCCCAGTGCAGATTCAGAGCAGCAGAAACAACATTACTGAGATGCAGATTACTGACTTGTTTGAGGATACCAATTGGCAGGGACAATCATCTTTTCTGAGGACTAATCCTCCCTTCTATTATGATAACAATGTTGCTGAGCTCTCATCAATTCCAAGGATTCAGAGTAGTCAGCAGTATCAACCAATTCAGAGTCATGGTTTTCATCAACAGGGAGAAGAATCATTTGGTGCAATGAATCTCCAATATCCATTCCTGAGTAGTTCACAACAGCCAAATAATGGTGAGGCTACAAACATGCAATTGCATCTTCATCCACACCTTCATGGCCATGGGCCATCTCCTCCTCCTACTCCTGATAATGAAGAGAACCACCACCATATGATGTTTCTGTGGCAGAATAATAGGCCTCAATAA 1113 0.4052 MASSSGNMNEEEGASDNNHGDLNKENNPSSSSINDGNCRCTCKKSKCVKFYCRCFNSGNFCNDSCSCKNCLNNEENKDAVEEIKKNIQLRDPEAFESKNLARTRNGCHCRKSECTLQYCVCKRNGVGCTLNCLCEGCKNEYGINPNPNHNNGSKNVETIMDNESSSGSSQSYHPAVHANSSIQLPDDELGNSNNVNNNNIHMPMPTNPVDSPYYNFLVHQNHVAAPYYDPLLTPVQIQSSRNNITEMQITDLFEDTNWQGQSSFLRTNPPFYYDNNVAELSSIPRIQSSQQYQPIQSHGFHQQGEESFGAMNLQYPFLSSSQQPNNGEATNMQLHLHPHLHGHGPSPPPTPDNEENHHHMMFLWQNNRPQ 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc39g00006 370 ProSiteProfiles CRC domain profile. 36 142 IPR005172 -
Stsc39g00006 370 MobiDBLite consensus disorder prediction 1 34 - -
Stsc39g00006 370 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 39 74 IPR005172 -
Stsc39g00006 370 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 105 140 IPR005172 -
Stsc39g00006 370 MobiDBLite consensus disorder prediction 148 176 - -
Stsc39g00006 370 MobiDBLite consensus disorder prediction 20 34 - -
Stsc39g00006 370 MobiDBLite consensus disorder prediction 336 356 - -
Stsc39g00006 370 SMART CXC_2 102 143 IPR033467 -
Stsc39g00006 370 SMART CXC_2 35 76 IPR033467 -
Stsc39g00006 370 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 2 17 297 IPR044522 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc39g00006 Stsc-Chr39 27499 28738 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc39g00006 35 142 CPP Transcription Factor Family AT3G22760 44.531 6.33e-30 118
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CPP Stsc39g00006 TCR 5e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc39g00006 - K21776 ahf:112771246 158.303